Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPX90_RS10045 Genome accession   NZ_CP046752
Coordinates   1072095..1073321 (+) Length   408 a.a.
NCBI ID   WP_068969232.1    Uniprot ID   -
Organism   Photobacterium damselae strain 9046-81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067095..1078321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX90_RS10025 pdhR 1067619..1068392 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  GPX90_RS10030 ampD 1068752..1069330 (-) 579 WP_005297607.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPX90_RS10035 - 1069822..1070337 (+) 516 WP_158135329.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GPX90_RS10040 pilB 1070338..1072029 (+) 1692 WP_106223632.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPX90_RS10045 pilC 1072095..1073321 (+) 1227 WP_068969232.1 type II secretion system F family protein Machinery gene
  GPX90_RS10050 pilD 1073504..1074382 (+) 879 WP_151171377.1 A24 family peptidase Machinery gene
  GPX90_RS10055 coaE 1074384..1074986 (+) 603 WP_109374725.1 dephospho-CoA kinase -
  GPX90_RS10060 zapD 1075054..1075791 (+) 738 WP_005297594.1 cell division protein ZapD -
  GPX90_RS10065 yacG 1075800..1076009 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  GPX90_RS10070 mutT 1076228..1076668 (+) 441 WP_158135331.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45030.18 Da        Isoelectric Point: 10.0330

>NTDB_id=407146 GPX90_RS10045 WP_068969232.1 1072095..1073321(+) (pilC) [Photobacterium damselae strain 9046-81]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAIGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=407146 GPX90_RS10045 WP_068969232.1 1072095..1073321(+) (pilC) [Photobacterium damselae strain 9046-81]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACAGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTATAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGGATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACCTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCTGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACTCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.75

98.039

0.547
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilG Neisseria meningitidis 44/76-A

42.469

99.265

0.422
  pilG Neisseria gonorrhoeae MS11

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment