Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SSU1300283_RS09100 Genome accession   NZ_CP058741
Coordinates   1870347..1871123 (-) Length   258 a.a.
NCBI ID   WP_004194108.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865347..1876123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS09070 (SSU1300283_01836) - 1865463..1865852 (+) 390 WP_013730574.1 DUF1761 domain-containing protein -
  SSU1300283_RS09075 (SSU1300283_01837) - 1865927..1866895 (+) 969 WP_002938836.1 aromatic acid exporter family protein -
  SSU1300283_RS09080 (SSU1300283_01838) - 1866982..1868271 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSU1300283_RS09085 (SSU1300283_01839) - 1868532..1869263 (-) 732 WP_004194101.1 GntR family transcriptional regulator -
  SSU1300283_RS09090 (SSU1300283_01840) - 1869363..1869680 (-) 318 WP_004194104.1 DUF960 domain-containing protein -
  SSU1300283_RS09095 (SSU1300283_01841) - 1869738..1870271 (-) 534 WP_004194106.1 DUF402 domain-containing protein -
  SSU1300283_RS09100 (SSU1300283_01842) recX 1870347..1871123 (-) 777 WP_004194108.1 recombination regulator RecX Regulator
  SSU1300283_RS09105 (SSU1300283_01843) rlmD 1871161..1872513 (+) 1353 WP_024390919.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  SSU1300283_RS10835 - 1872797..1873000 (+) 204 Protein_1798 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30460.04 Da        Isoelectric Point: 9.2585

>NTDB_id=407144 SSU1300283_RS09100 WP_004194108.1 1870347..1871123(-) (recX) [Streptococcus suis strain 13-00283-02]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVMVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLSQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=407144 SSU1300283_RS09100 WP_004194108.1 1870347..1871123(-) (recX) [Streptococcus suis strain 13-00283-02]
ATGAGAATTACAAAAATTGAAAAAAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGATGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTCCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGGAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGAGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGACTTAATTGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368

Multiple sequence alignment