Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SSU1300283_RS08685 Genome accession   NZ_CP058741
Coordinates   1787223..1788263 (-) Length   346 a.a.
NCBI ID   WP_013730555.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782223..1793263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS08660 (SSU1300283_01753) nusA 1782287..1783429 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  SSU1300283_RS08665 (SSU1300283_01754) rimP 1783502..1783972 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  SSU1300283_RS08670 (SSU1300283_01755) - 1784289..1785578 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSU1300283_RS08675 (SSU1300283_01756) trmB 1785744..1786382 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSU1300283_RS08680 (SSU1300283_01757) ccrZ 1786379..1787173 (-) 795 WP_013730554.1 cell cycle regulator CcrZ -
  SSU1300283_RS08685 (SSU1300283_01758) pptB 1787223..1788263 (-) 1041 WP_013730555.1 ABC transporter permease Regulator
  SSU1300283_RS08690 (SSU1300283_01759) pptA 1788260..1788994 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  SSU1300283_RS08695 (SSU1300283_01760) - 1789057..1789470 (+) 414 WP_002939203.1 HIT family protein -
  SSU1300283_RS08700 (SSU1300283_01761) - 1789472..1789774 (+) 303 WP_002939199.1 hypothetical protein -
  SSU1300283_RS08705 (SSU1300283_01762) - 1789883..1791076 (-) 1194 WP_002939198.1 LCP family protein -
  SSU1300283_RS08710 (SSU1300283_01763) - 1791073..1791600 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  SSU1300283_RS08715 (SSU1300283_01764) tsaE 1791593..1792033 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40172.54 Da        Isoelectric Point: 10.0123

>NTDB_id=407138 SSU1300283_RS08685 WP_013730555.1 1787223..1788263(-) (pptB) [Streptococcus suis strain 13-00283-02]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARCTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=407138 SSU1300283_RS08685 WP_013730555.1 1787223..1788263(-) (pptB) [Streptococcus suis strain 13-00283-02]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCGTTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGATGCACAGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465
  pptB Streptococcus thermophilus LMD-9

44.886

100

0.457

Multiple sequence alignment