Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPX93_RS04185 Genome accession   NZ_CP046749
Coordinates   903304..904671 (+) Length   455 a.a.
NCBI ID   WP_123163095.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 898304..909671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS04165 rsxB 898794..899381 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  GPX93_RS04170 rsxA 899381..899962 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  GPX93_RS04180 uvrB 900844..902874 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  GPX93_RS04185 luxO 903304..904671 (+) 1368 WP_123163095.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPX93_RS04190 luxU 904675..905016 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  GPX93_RS04195 - 905005..905895 (-) 891 WP_000061066.1 YvcK family protein -
  GPX93_RS04200 moaA 906202..907191 (+) 990 WP_123163096.1 GTP 3',8-cyclase MoaA -
  GPX93_RS04205 moaB 907251..907763 (+) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  GPX93_RS04210 moaC 907774..908253 (+) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPX93_RS04215 moaD 908250..908495 (+) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  GPX93_RS04220 moaE 908497..908958 (+) 462 WP_123162518.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50908.23 Da        Isoelectric Point: 5.7719

>NTDB_id=407096 GPX93_RS04185 WP_123163095.1 903304..904671(+) (luxO) [Vibrio cholerae strain 2015V-1118]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAARSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=407096 GPX93_RS04185 WP_123163095.1 903304..904671(+) (luxO) [Vibrio cholerae strain 2015V-1118]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGAGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGAAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGTGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
TAATGTGCGTCAATTGCAAAACGTTCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGTTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAGCAAGCCATCGAAGCGTGTGATGGTAACATTCCTCGCGCCGC
GACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.496

99.341

0.382

Multiple sequence alignment