Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   GPX93_RS02145 Genome accession   NZ_CP046749
Coordinates   431784..432395 (-) Length   203 a.a.
NCBI ID   WP_123162388.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 426784..437395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS02120 - 427312..427881 (-) 570 WP_123162387.1 BON domain-containing protein -
  GPX93_RS02125 - 427884..428474 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  GPX93_RS02130 - 428478..428846 (-) 369 WP_001892065.1 YraN family protein -
  GPX93_RS02135 - 428833..430638 (-) 1806 WP_001015487.1 penicillin-binding protein activator -
  GPX93_RS02140 rsmI 430708..431574 (+) 867 WP_057550695.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPX93_RS02145 hapR 431784..432395 (-) 612 WP_123162388.1 quorum-sensing master transcriptional regulator HapR Regulator
  GPX93_RS02150 hpt 432691..433224 (+) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  GPX93_RS02155 can 433299..433967 (-) 669 WP_001114117.1 carbonate dehydratase -
  GPX93_RS02160 - 434115..435761 (+) 1647 WP_000484912.1 SulP family inorganic anion transporter -
  GPX93_RS02165 - 436142..437059 (+) 918 WP_000271068.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23778.48 Da        Isoelectric Point: 6.3376

>NTDB_id=407092 GPX93_RS02145 WP_123162388.1 431784..432395(-) (hapR) [Vibrio cholerae strain 2015V-1118]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRDIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=407092 GPX93_RS02145 WP_123162388.1 431784..432395(-) (hapR) [Vibrio cholerae strain 2015V-1118]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGACATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAACGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGTCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.015

100

0.99
  hapR Vibrio cholerae strain A1552

99.015

100

0.99
  opaR Vibrio parahaemolyticus RIMD 2210633

72.222

97.537

0.704

Multiple sequence alignment