Detailed information NTG0407071

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SSU16085_RS10445
• Genome accession: NZ_CP058740
• Coordinates: 2158788..2159882 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain 16085/3b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2153788..2164882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU16085_RS10420 (SSU16085_02122)	pgsA	2154307..2154846 (-)	540	WP_014736596.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SSU16085_RS10425 (SSU16085_02123)	rodZ	2154856..2155713 (-)	858	WP_024394581.1	cytoskeleton protein RodZ	-
SSU16085_RS10430 (SSU16085_02124)	yfmH	2155795..2157078 (-)	1284	WP_024394582.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SSU16085_RS10435 (SSU16085_02125)	yfmF	2157075..2158328 (-)	1254	WP_009911054.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SSU16085_RS10440 (SSU16085_02126)	yaaA	2158402..2158785 (+)	384	WP_024394583.1	S4 domain-containing protein YaaA	-
SSU16085_RS10445 (SSU16085_02127)	recF	2158788..2159882 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
SSU16085_RS10450 (SSU16085_02128)	guaB	2160154..2161635 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
SSU16085_RS10455 (SSU16085_02129)	trpS	2161867..2162892 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-
SSU16085_RS10460 (SSU16085_02130)	-	2163247..2164119 (+)	873	WP_013730698.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=407071 SSU16085_RS10445 WP_012028050.1 2158788..2159882(+) (recF) [Streptococcus suis strain 16085/3b]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=407071 SSU16085_RS10445 WP_012028050.1 2158788..2159882(+) (recF) [Streptococcus suis strain 16085/3b]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442