Detailed information NTG0407035

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY00_RS00395
• Genome accession: NZ_CP046747
• Coordinates: 91398..92822 (+)
• Length: 474 a.a.
• NCBI ID: WP_044127277.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3541-04
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 86398..97822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY00_RS00375	-	86794..87579 (-)	786	WP_044127274.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY00_RS00380	cobT	87579..88604 (-)	1026	WP_162811227.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY00_RS00385	msrB	89089..89535 (-)	447	WP_044127276.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPY00_RS00390	-	89881..91254 (+)	1374	WP_000117953.1	L-cystine transporter	-
GPY00_RS00395	sbcB	91398..92822 (+)	1425	WP_044127277.1	exodeoxyribonuclease I	Machinery gene
GPY00_RS00400	-	92854..93228 (+)	375	WP_001881007.1	CidA/LrgA family protein	-
GPY00_RS00405	-	93219..93893 (+)	675	WP_000266239.1	LrgB family protein	-
GPY00_RS00410	cdd	94063..94950 (+)	888	WP_001245905.1	cytidine deaminase	-
GPY00_RS00415	-	95109..95984 (+)	876	WP_000462870.1	AEC family transporter	-
GPY00_RS00420	purT	96138..97313 (+)	1176	WP_199252402.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54471.92 Da
• Isoelectric Point: 6.1693

>NTDB_id=407035 GPY00_RS00395 WP_044127277.1 91398..92822(+) (sbcB) [Vibrio cholerae strain 3541-04]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMAFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIAPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPNELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQECDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAVQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQTDPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=407035 GPY00_RS00395 WP_044127277.1 91398..92822(+) (sbcB) [Vibrio cholerae strain 3541-04]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGCCTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAACTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAATTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGCGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGAATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGTGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGGTACAGGTGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAA
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	98.101	100	0.981