Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSU16085_RS04200 Genome accession   NZ_CP058740
Coordinates   886550..887146 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain 16085/3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881550..892146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS04185 (SSU16085_00852) vicX 882561..883364 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  SSU16085_RS04190 (SSU16085_00854) - 883925..884374 (+) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  SSU16085_RS04195 (SSU16085_00855) pbp2b 884466..886541 (+) 2076 WP_043032936.1 penicillin-binding protein PBP2B -
  SSU16085_RS04200 (SSU16085_00856) recR 886550..887146 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  SSU16085_RS04205 (SSU16085_00857) - 887251..888297 (+) 1047 WP_002935850.1 D-alanine--D-alanine ligase -
  SSU16085_RS04210 (SSU16085_00858) - 888385..888765 (+) 381 WP_013730250.1 OsmC family protein -
  SSU16085_RS04215 (SSU16085_00859) - 888767..889843 (+) 1077 WP_002935854.1 ABC transporter permease -
  SSU16085_RS04220 (SSU16085_00860) - 889853..890257 (+) 405 Protein_802 ABC transporter ATP-binding protein -
  SSU16085_RS04225 (SSU16085_00861) - 890498..891700 (+) 1203 WP_002935596.1 IS110 family transposase -
  SSU16085_RS04230 (SSU16085_00862) - 891873..892145 (+) 273 Protein_804 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=407027 SSU16085_RS04200 WP_002935848.1 886550..887146(+) (recR) [Streptococcus suis strain 16085/3b]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=407027 SSU16085_RS04200 WP_002935848.1 886550..887146(+) (recR) [Streptococcus suis strain 16085/3b]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment