Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SSU16085_RS02260 Genome accession   NZ_CP058740
Coordinates   461289..462329 (+) Length   346 a.a.
NCBI ID   WP_043032974.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 456289..467329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS02230 (SSU16085_00456) tsaE 457519..457959 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SSU16085_RS02235 (SSU16085_00457) - 457952..458479 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  SSU16085_RS02240 (SSU16085_00458) - 458476..459669 (+) 1194 WP_002939198.1 LCP family protein -
  SSU16085_RS02245 (SSU16085_00459) - 459778..460080 (-) 303 WP_002939199.1 hypothetical protein -
  SSU16085_RS02250 (SSU16085_00460) - 460082..460495 (-) 414 WP_002939203.1 HIT family protein -
  SSU16085_RS02255 (SSU16085_00461) pptA 460558..461292 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  SSU16085_RS02260 (SSU16085_00462) pptB 461289..462329 (+) 1041 WP_043032974.1 ABC transporter permease Regulator
  SSU16085_RS02265 (SSU16085_00463) ccrZ 462379..463173 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  SSU16085_RS02270 (SSU16085_00464) trmB 463170..463808 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSU16085_RS02275 (SSU16085_00465) rimP 464066..464536 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  SSU16085_RS02280 (SSU16085_00466) nusA 464609..465751 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  SSU16085_RS02285 (SSU16085_00467) rnpM 465768..466064 (+) 297 WP_002942375.1 RNase P modulator RnpM -
  SSU16085_RS02290 (SSU16085_00468) - 466021..466359 (+) 339 WP_043028741.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40203.56 Da        Isoelectric Point: 10.0123

>NTDB_id=407011 SSU16085_RS02260 WP_043032974.1 461289..462329(+) (pptB) [Streptococcus suis strain 16085/3b]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLQIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARCTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=407011 SSU16085_RS02260 WP_043032974.1 461289..462329(+) (pptB) [Streptococcus suis strain 16085/3b]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCGTTCCCTGAGAATC
CGTTGCAGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGATGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465
  pptB Streptococcus thermophilus LMD-9

44.886

100

0.457