Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPW86_RS04835 Genome accession   NZ_CP046741
Coordinates   931065..932159 (-) Length   364 a.a.
NCBI ID   WP_095462373.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 926065..937159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS04825 - 927817..928482 (+) 666 WP_000268201.1 flagellar brake protein -
  GPW86_RS04830 luxQ 928474..931047 (-) 2574 WP_001026310.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPW86_RS04835 luxP 931065..932159 (-) 1095 WP_095462373.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPW86_RS04840 traF 932371..933531 (-) 1161 WP_114736304.1 conjugal transfer protein TraF -
  GPW86_RS04845 - 933633..933938 (-) 306 WP_095489792.1 GIY-YIG nuclease family protein -
  GPW86_RS04850 - 933938..934588 (-) 651 WP_001025632.1 YceH family protein -
  GPW86_RS04855 - 934630..934827 (-) 198 WP_001246071.1 hypothetical protein -
  GPW86_RS04860 - 935015..935335 (+) 321 WP_001089529.1 DUF496 family protein -
  GPW86_RS04870 - 935748..935999 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41153.68 Da        Isoelectric Point: 6.1106

>NTDB_id=406947 GPW86_RS04835 WP_095462373.1 931065..932159(-) (luxP) [Vibrio cholerae strain 3523-03]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVSISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHENGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=406947 GPW86_RS04835 WP_095462373.1 931065..932159(-) (luxP) [Vibrio cholerae strain 3523-03]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCAGTATTTCGGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGAACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGATGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACAGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984

Multiple sequence alignment