Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HYO64_RS10415 Genome accession   NZ_CP058729
Coordinates   2162173..2162808 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain M164-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157173..2167808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS10390 - 2157229..2158209 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HYO64_RS10395 kdsB 2158221..2158982 (-) 762 WP_114154033.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HYO64_RS10400 lpxK 2158992..2160002 (-) 1011 WP_114154032.1 tetraacyldisaccharide 4'-kinase -
  HYO64_RS10405 msbA 2160005..2161732 (-) 1728 WP_114154030.1 lipid A export permease/ATP-binding protein MsbA -
  HYO64_RS10410 - 2161729..2162157 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  HYO64_RS10415 exbB 2162173..2162808 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HYO64_RS10420 - 2162858..2163745 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  HYO64_RS10425 - 2163742..2164524 (-) 783 WP_000057212.1 ParA family protein -
  HYO64_RS10430 rsmG 2164546..2165178 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HYO64_RS10435 murU 2165266..2165955 (-) 690 WP_016654158.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HYO64_RS10440 - 2165955..2166968 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=406946 HYO64_RS10415 WP_000264037.1 2162173..2162808(-) (exbB) [Acinetobacter baumannii strain M164-3]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=406946 HYO64_RS10415 WP_000264037.1 2162173..2162808(-) (exbB) [Acinetobacter baumannii strain M164-3]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment