Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HYO64_RS03815 Genome accession   NZ_CP058729
Coordinates   772893..773255 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain M164-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767893..778255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS03800 - 770390..771505 (-) 1116 WP_001260820.1 efflux RND transporter periplasmic adaptor subunit -
  HYO64_RS03805 - 771565..772203 (-) 639 WP_072688672.1 hypothetical protein -
  HYO64_RS03810 pilG 772486..772869 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  HYO64_RS03815 pilH 772893..773255 (+) 363 WP_000101096.1 response regulator Machinery gene
  HYO64_RS03820 - 773316..773852 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  HYO64_RS03825 - 773899..775977 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=406925 HYO64_RS03815 WP_000101096.1 772893..773255(+) (pilH) [Acinetobacter baumannii strain M164-3]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=406925 HYO64_RS03815 WP_000101096.1 772893..773255(+) (pilH) [Acinetobacter baumannii strain M164-3]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392