Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPW70_RS14300 Genome accession   NZ_CP046740
Coordinates   2057955..2059322 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain 3566-06     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052955..2064322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS14265 moaE 2053668..2054129 (-) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -
  GPW70_RS14270 moaD 2054131..2054376 (-) 246 WP_000598587.1 molybdopterin synthase sulfur carrier subunit -
  GPW70_RS14275 moaC 2054373..2054852 (-) 480 WP_032472887.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPW70_RS14280 moaB 2054863..2055375 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  GPW70_RS14285 moaA 2055435..2056424 (-) 990 WP_032472886.1 GTP 3',8-cyclase MoaA -
  GPW70_RS14290 - 2056731..2057621 (+) 891 WP_000061070.1 YvcK family protein -
  GPW70_RS14295 luxU 2057610..2057951 (-) 342 WP_001888249.1 quorum-sensing phosphorelay protein LuxU -
  GPW70_RS14300 luxO 2057955..2059322 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPW70_RS14305 uvrB 2059752..2061782 (-) 2031 WP_032472885.1 excinuclease ABC subunit UvrB -
  GPW70_RS14315 - 2062550..2063938 (-) 1389 WP_000221030.1 IS4-like element ISVa18 family transposase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=406924 GPW70_RS14300 WP_001888250.1 2057955..2059322(-) (luxO) [Vibrio cholerae strain 3566-06]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=406924 GPW70_RS14300 WP_001888250.1 2057955..2059322(-) (luxO) [Vibrio cholerae strain 3566-06]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACCGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGAACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGTGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAGTACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAATGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGTTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATAAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCTGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCCCGCGCCGC
GACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment