Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   HYO64_RS02040 Genome accession   NZ_CP058729
Coordinates   427796..428833 (+) Length   345 a.a.
NCBI ID   WP_114155193.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422796..433833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS02005 - 424456..424586 (-) 131 Protein_382 hypothetical protein -
  HYO64_RS02010 rpoZ 424625..424903 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HYO64_RS02015 gmk 424976..425605 (-) 630 WP_000015937.1 guanylate kinase -
  HYO64_RS02020 ispH 425728..426678 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HYO64_RS02025 - 426691..426942 (-) 252 Protein_386 hypothetical protein -
  HYO64_RS02030 fimU 426848..427297 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  HYO64_RS02035 pilV 427294..427794 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  HYO64_RS02040 pilW 427796..428833 (+) 1038 WP_114155193.1 PilW family protein Machinery gene
  HYO64_RS02045 - 428830..429612 (+) 783 WP_031963609.1 pilus assembly PilX family protein -
  HYO64_RS02050 - 429628..433302 (+) 3675 WP_114155194.1 PilC/PilY family type IV pilus protein -
  HYO64_RS02055 pilY2 433316..433792 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37427.32 Da        Isoelectric Point: 8.3680

>NTDB_id=406916 HYO64_RS02040 WP_114155193.1 427796..428833(+) (pilW) [Acinetobacter baumannii strain M164-3]
MKKHQGFTLIELILSLALGLIITAAAILLFLTSQKSLSMQVGVSDLQDNANFGLNYLSQDIRLANLNNPKAVINDQTAYG
GIVLTSAINSAKDAANEPLSNLYKTIIGVTANTNLLSRSQGHSVGSGNAWTGASNVQSNGSDIASDQLVIQYVPQYTIDT
KSTATQADDEYIGGTDCEGNNLNFPLASGRQVIIQRYFLRKDAKNNSDEPNQPLALACDAGYYPLTGNPTAVTRYGDAGE
IIMKRVDYFRVLLNVQGNSGRRYISIHDYLNLTAPRPRIVSVQIGLLTRSLQSVGAEIAIKDGQQFSVLDQTITVKKPEN
STKKYVRQVISQTIALRNVIGERGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=406916 HYO64_RS02040 WP_114155193.1 427796..428833(+) (pilW) [Acinetobacter baumannii strain M164-3]
ATGAAAAAGCATCAAGGTTTTACATTAATCGAGTTAATACTTTCGTTAGCCTTAGGCCTTATAATTACTGCAGCTGCAAT
ATTATTATTTTTGACTAGTCAAAAAAGTTTATCTATGCAGGTCGGAGTGTCTGATTTACAAGATAATGCTAATTTTGGAC
TTAACTATTTATCTCAAGATATTCGTCTTGCAAATTTAAATAACCCCAAAGCAGTTATTAATGATCAAACTGCTTATGGC
GGTATTGTTTTAACCTCTGCGATTAATTCGGCTAAAGATGCTGCTAATGAACCTCTTAGTAATCTATATAAAACTATTAT
TGGGGTAACTGCTAACACTAATTTACTTTCACGTAGTCAGGGACATAGTGTCGGTAGTGGTAATGCTTGGACGGGAGCGT
CAAACGTCCAAAGTAATGGAAGTGATATCGCTAGTGACCAACTCGTTATTCAATATGTACCACAATATACAATTGATACA
AAAAGTACTGCAACTCAAGCTGATGATGAATATATAGGTGGTACAGATTGCGAAGGAAATAATCTGAATTTTCCTCTTGC
TAGTGGGCGTCAAGTCATAATACAACGTTATTTTTTACGTAAAGACGCTAAAAATAATAGTGATGAACCTAACCAACCTT
TAGCACTTGCTTGTGATGCCGGCTATTACCCATTAACTGGTAACCCAACTGCTGTAACTCGTTATGGGGATGCAGGTGAA
ATTATAATGAAACGTGTGGATTATTTTCGGGTTTTACTAAATGTTCAAGGGAATTCTGGACGACGTTATATTTCAATACA
TGATTATTTGAACTTGACAGCTCCTCGGCCACGTATTGTTTCAGTCCAAATTGGCTTATTAACACGTTCATTGCAATCTG
TAGGTGCAGAAATAGCAATTAAAGATGGTCAACAATTTTCTGTATTAGATCAAACTATCACAGTAAAAAAACCTGAAAAT
TCGACAAAAAAATATGTGCGTCAAGTGATATCACAAACCATTGCCTTGCGTAATGTGATCGGGGAGCGTGGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type IV Pilus-assembly protein W (PilW)

(197-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

39.496

100

0.409