Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HYO64_RS02030 Genome accession   NZ_CP058729
Coordinates   426848..427297 (+) Length   149 a.a.
NCBI ID   WP_114155191.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421848..432297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS02000 - 422311..424416 (-) 2106 WP_114155188.1 RelA/SpoT family protein -
  HYO64_RS02005 - 424456..424586 (-) 131 Protein_382 hypothetical protein -
  HYO64_RS02010 rpoZ 424625..424903 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HYO64_RS02015 gmk 424976..425605 (-) 630 WP_000015937.1 guanylate kinase -
  HYO64_RS02020 ispH 425728..426678 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HYO64_RS02025 - 426691..426942 (-) 252 Protein_386 hypothetical protein -
  HYO64_RS02030 fimU 426848..427297 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  HYO64_RS02035 pilV 427294..427794 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  HYO64_RS02040 pilW 427796..428833 (+) 1038 WP_114155193.1 PilW family protein Machinery gene
  HYO64_RS02045 - 428830..429612 (+) 783 WP_031963609.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16121.76 Da        Isoelectric Point: 8.5176

>NTDB_id=406914 HYO64_RS02030 WP_114155191.1 426848..427297(+) (fimU) [Acinetobacter baumannii strain M164-3]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTD
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=406914 HYO64_RS02030 WP_114155191.1 426848..427297(+) (fimU) [Acinetobacter baumannii strain M164-3]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTGAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTCGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

40.252

100

0.43

Multiple sequence alignment