Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPW74_RS16035 Genome accession   NZ_CP046738
Coordinates   671442..672536 (+) Length   364 a.a.
NCBI ID   WP_001907859.1    Uniprot ID   Q25QW7
Organism   Vibrio cholerae strain 2015V-1126     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 666442..677536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS16000 - 667602..667853 (-) 252 WP_001882582.1 YgjV family protein -
  GPW74_RS16010 - 668266..668586 (-) 321 WP_001089529.1 DUF496 family protein -
  GPW74_RS16015 - 668774..668971 (+) 198 WP_001246071.1 hypothetical protein -
  GPW74_RS16020 - 669013..669663 (+) 651 WP_123011995.1 YceH family protein -
  GPW74_RS16025 - 669663..669968 (+) 306 WP_123011996.1 GIY-YIG nuclease family protein -
  GPW74_RS16030 traF 670070..671230 (+) 1161 WP_123011997.1 conjugal transfer protein TraF -
  GPW74_RS16035 luxP 671442..672536 (+) 1095 WP_001907859.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPW74_RS16040 luxQ 672554..675127 (+) 2574 WP_123011998.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPW74_RS16045 - 675119..675784 (-) 666 WP_000268197.1 flagellar brake protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41227.89 Da        Isoelectric Point: 6.5074

>NTDB_id=406889 GPW74_RS16035 WP_001907859.1 671442..672536(+) (luxP) [Vibrio cholerae strain 2015V-1126]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=406889 GPW74_RS16035 WP_001907859.1 671442..672536(+) (luxP) [Vibrio cholerae strain 2015V-1126]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGTTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATCGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q25QW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.626

100

0.986

Multiple sequence alignment