Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSU12_RS04240 Genome accession   NC_017619
Coordinates   859066..859731 (-) Length   221 a.a.
NCBI ID   WP_012775103.1    Uniprot ID   A0A0H3MVW7
Organism   Streptococcus suis SS12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 854066..864731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU12_RS10630 (SSU12_0823) - 854144..855045 (+) 902 Protein_777 Abi family protein -
  SSU12_RS04225 (SSU12_0825) xerS 855404..856474 (+) 1071 WP_012775101.1 tyrosine recombinase XerS Machinery gene
  SSU12_RS04230 (SSU12_0826) - 856544..858052 (-) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  SSU12_RS04235 (SSU12_0827) - 858128..859069 (-) 942 WP_012775102.1 sensor histidine kinase -
  SSU12_RS04240 (SSU12_0828) braR 859066..859731 (-) 666 WP_012775103.1 response regulator transcription factor Regulator
  SSU12_RS04245 (SSU12_0829) - 859770..860027 (-) 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SSU12_RS04250 (SSU12_0830) relB 860011..860262 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  SSU12_RS04255 (SSU12_0831) - 860354..862324 (-) 1971 WP_014636593.1 ABC transporter permease -
  SSU12_RS04260 (SSU12_0832) - 862325..863077 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  SSU12_RS04265 (SSU12_0833) - 863213..863947 (-) 735 WP_011922410.1 ABC transporter permease -
  SSU12_RS04270 (SSU12_0834) - 863949..864695 (-) 747 WP_011922411.1 ABC transporter permease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25460.22 Da        Isoelectric Point: 4.7792

>NTDB_id=40682 SSU12_RS04240 WP_012775103.1 859066..859731(-) (braR) [Streptococcus suis SS12]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSELSIDQFQLSLDGRFSNESEQVQLSPTETKILS
ALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=40682 SSU12_RS04240 WP_012775103.1 859066..859731(-) (braR) [Streptococcus suis SS12]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCT
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTCTCCAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTTAATCAATTCAGCAAATCGAGCGAATTGTCTATCGATCAGT
TCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTATCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGATGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCGTTC
GTGGCGTGGGGTACTTGATCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MVW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.643

0.466