Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GPJ65_RS22030 | Genome accession | NZ_CP046671 |
| Coordinates | 4629810..4630607 (+) | Length | 265 a.a. |
| NCBI ID | WP_004858028.1 | Uniprot ID | - |
| Organism | Raoultella ornithinolytica strain 193104922 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4624810..4635607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPJ65_RS21995 (GPJ65_21990) | gspH | 4624930..4625448 (+) | 519 | WP_015585120.1 | type II secretion system minor pseudopilin GspH | - |
| GPJ65_RS22000 (GPJ65_21995) | gspI | 4625445..4625810 (+) | 366 | WP_004858044.1 | type II secretion system minor pseudopilin GspI | - |
| GPJ65_RS22005 (GPJ65_22000) | gspJ | 4625822..4626406 (+) | 585 | WP_088402371.1 | type II secretion system minor pseudopilin GspJ | - |
| GPJ65_RS22010 (GPJ65_22005) | gspK | 4626403..4627389 (+) | 987 | WP_088402372.1 | type II secretion system minor pseudopilin GspK | - |
| GPJ65_RS22015 (GPJ65_22010) | gspL | 4627376..4628578 (+) | 1203 | WP_004858036.1 | type II secretion system protein GspL | - |
| GPJ65_RS22020 (GPJ65_22015) | gspM | 4628571..4629065 (+) | 495 | WP_088402373.1 | type II secretion system protein GspM | - |
| GPJ65_RS22025 (GPJ65_22020) | - | 4629055..4629795 (+) | 741 | WP_015585125.1 | type II secretion system protein N | - |
| GPJ65_RS22030 (GPJ65_22025) | pilD | 4629810..4630607 (+) | 798 | WP_004858028.1 | prepilin peptidase | Machinery gene |
| GPJ65_RS22035 (GPJ65_22030) | hrpB | 4630628..4633057 (-) | 2430 | WP_088402374.1 | ATP-dependent helicase HrpB | - |
| GPJ65_RS22040 (GPJ65_22035) | thpR | 4633130..4633666 (+) | 537 | WP_004858022.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| GPJ65_RS22045 (GPJ65_22040) | sfsA | 4633666..4634382 (+) | 717 | WP_004858020.1 | DNA/RNA nuclease SfsA | - |
| GPJ65_RS22050 (GPJ65_22045) | dksA | 4634547..4635002 (+) | 456 | WP_004858018.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29315.95 Da Isoelectric Point: 8.4762
>NTDB_id=406593 GPJ65_RS22030 WP_004858028.1 4629810..4630607(+) (pilD) [Raoultella ornithinolytica strain 193104922]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLTGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLTGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL
Nucleotide
Download Length: 798 bp
>NTDB_id=406593 GPJ65_RS22030 WP_004858028.1 4629810..4630607(+) (pilD) [Raoultella ornithinolytica strain 193104922]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GACCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GACCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
48.529 |
100 |
0.498 |
| pilD | Vibrio campbellii strain DS40M4 |
45.221 |
100 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
46.614 |
94.717 |
0.442 |
| pilD | Acinetobacter baumannii D1279779 |
44.574 |
97.358 |
0.434 |
| pilD | Acinetobacter nosocomialis M2 |
44.186 |
97.358 |
0.43 |