Detailed information NTG0406572

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJN15_RS13485
• Genome accession: NZ_CP046670
• Coordinates: 3139068..3139961 (+)
• Length: 297 a.a.
• NCBI ID: WP_071952414.1
• Uniprot ID: -
• Organism: Alteromonas mediterranea strain AltCH17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3134068..3144961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJN15_RS13460 (FJN15_13460)	ampD	3134607..3135143 (-)	537	WP_141152565.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FJN15_RS13465 (FJN15_13465)	-	3135319..3135837 (+)	519	WP_012519426.1	TIGR02281 family clan AA aspartic protease	-
FJN15_RS13470 (FJN15_13470)	nadC	3135857..3136711 (+)	855	WP_015067810.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FJN15_RS13475 (FJN15_13475)	-	3137247..3137669 (+)	423	WP_071952410.1	pilin	-
FJN15_RS13480 (FJN15_13480)	pilC	3137742..3138950 (+)	1209	WP_071952412.1	type II secretion system F family protein	Machinery gene
FJN15_RS13485 (FJN15_13485)	pilD	3139068..3139961 (+)	894	WP_071952414.1	prepilin peptidase	Machinery gene
FJN15_RS13490 (FJN15_13490)	coaE	3139983..3140597 (+)	615	WP_071953272.1	dephospho-CoA kinase	-
FJN15_RS13495 (FJN15_13495)	zapD	3140811..3141563 (+)	753	WP_015067815.1	cell division protein ZapD	-
FJN15_RS13500 (FJN15_13500)	yacG	3141654..3141881 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
FJN15_RS13505 (FJN15_13505)	-	3142074..3142946 (+)	873	WP_071952416.1	aspartoacylase	-
FJN15_RS13510 (FJN15_13510)	mutT	3143038..3143421 (-)	384	WP_157316460.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32783.80 Da
• Isoelectric Point: 5.2127

>NTDB_id=406572 FJN15_RS13485 WP_071952414.1 3139068..3139961(+) (pilD) [Alteromonas mediterranea strain AltCH17]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDGDTSLDTLNAPSQDDTFNLVKPDST
CPSCGHKIRAWENIPIISYLFLRGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGATPQALWAVVFTYVLVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQNIFVGTTDSIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=406572 FJN15_RS13485 WP_071952414.1 3139068..3139961(+) (pilD) [Alteromonas mediterranea strain AltCH17]
ATGGACGCTATAATAACCCTTAGCCAACTATACCCCGCTATATTCTATACCCTTATTTTCTTAGTGAGCTTAATGGTTGG
CAGCTTTTTAAATGTAGTGATCTACCGCTTACCCATTATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTATTTTA
CCGACGGTGATACCAGTTTAGACACACTTAACGCTCCTTCTCAAGACGATACCTTTAACCTAGTAAAACCAGACAGTACT
TGCCCGAGCTGCGGTCACAAAATTCGCGCATGGGAAAACATTCCAATAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTTTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCGCTACACCTCAAGCGCTTTGGGCCGTGGTTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGATTTAGAT
AAAATGTTGTTGCCAGACCAGCTCACGCTTCCTTTACTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
TACGACCGACTCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAGGGGCTCCCCGTT
ATCATCTTACTTTCATCATTAGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACTACTTACCTTG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.633	97.306	0.522
pilD	Vibrio campbellii strain DS40M4	53.448	97.643	0.522
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Acinetobacter nosocomialis M2	50.538	93.939	0.475
pilD	Neisseria gonorrhoeae MS11	50.57	88.552	0.448