Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HYQ63_RS23930 Genome accession   NZ_CP058693
Coordinates   5588899..5590320 (-) Length   473 a.a.
NCBI ID   WP_179935797.1    Uniprot ID   -
Organism   Streptomyces sp. Rer75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5583899..5595320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS23905 (HYQ63_23905) - 5583901..5584632 (-) 732 WP_179935793.1 hypothetical protein -
  HYQ63_RS23910 (HYQ63_23910) - 5584620..5585237 (-) 618 WP_179935794.1 SigE family RNA polymerase sigma factor -
  HYQ63_RS23915 (HYQ63_23915) - 5585491..5586411 (-) 921 WP_257232045.1 A/G-specific adenine glycosylase -
  HYQ63_RS23920 (HYQ63_23920) - 5586650..5587501 (+) 852 WP_179935795.1 hypothetical protein -
  HYQ63_RS23925 (HYQ63_23925) disA 5587570..5588628 (-) 1059 WP_179935796.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HYQ63_RS23930 (HYQ63_23930) radA/sms 5588899..5590320 (-) 1422 WP_179935797.1 DNA repair protein RadA Machinery gene
  HYQ63_RS23935 (HYQ63_23935) - 5590503..5592215 (+) 1713 WP_179935798.1 sigma-70 family RNA polymerase sigma factor -
  HYQ63_RS23940 (HYQ63_23940) - 5592796..5593653 (-) 858 WP_179935799.1 hypothetical protein -
  HYQ63_RS23945 (HYQ63_23945) - 5593760..5594689 (+) 930 WP_179935800.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49776.69 Da        Isoelectric Point: 7.1774

>NTDB_id=406537 HYQ63_RS23930 WP_179935797.1 5588899..5590320(-) (radA/sms) [Streptomyces sp. Rer75]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGAPAVRTTAPGRVTSAALPIGQVDGRQATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTGEESAGQVRLRADRIGALSEHLYLTAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LHFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGRIPEGMRVLEVADIGDALRVLPRRERADRSRADAPEQG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=406537 HYQ63_RS23930 WP_179935797.1 5588899..5590320(-) (radA/sms) [Streptomyces sp. Rer75]
ATGGCTGCCCGTAGCTCCTCCCGTTCATCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAATGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTTCGGCGCGCCCGCCGTGCGGACCACCG
CGCCCGGCCGGGTCACCTCGGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCTCCACCGGCGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGTGCTGCTGGCCGGGGAGCCGGGCGTCGGCAA
GTCGACGCTGCTGCTGGACGTCGCGGCCAAGGCGGCCACCGACGACCACCGGACGCTGTACGTGACCGGGGAGGAGTCGG
CCGGTCAGGTCCGGCTGCGGGCCGACCGCATCGGGGCGCTGAGCGAGCATCTCTACCTCACGGCCGAGACCGACCTGTCC
GCCGTGCTCGGCCATCTCGACTCGGTCAAGCCGTCGCTGCTGGTCCTGGACTCCGTCCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCCCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGCATGT
CCACGCTGCTGGTCGGCCATGTGACCAAGGACGGGGCGATCGCGGGCCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTG
CTGCACTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGTTACGGGGCGACGGACGAGGT
GGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGGCTGTTCCTCACCCGGCGCGCCGAGC
CGGTGCCCGGCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACGGTCGAC
TCGCAGATCCCCTCCCCGCGCCGCACCACCTCCGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCCGTCCTGGAGCA
GCGCGGCCGGATCAGCGCACTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTGTCGGAGCCCGCGG
CGGACCTCGCGGTGGCGCTCGCGCTGGCGAGCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAG
GTGGGGCTCGCGGGCGAGGTCCGGCGGGTCACGGGCGTGCAGCGGCGGCTGTCCGAGGCCGCCCGGCTGGGCTTCACCCA
CGCCCTGGTGCCCTCCGATCCGGGTCGCATCCCCGAGGGCATGCGGGTGCTGGAGGTGGCGGACATAGGGGACGCACTGC
GCGTACTGCCCCGCCGGGAGCGCGCCGACCGGTCCCGCGCCGACGCCCCCGAGCAGGGGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.772

0.421
  radA Streptococcus mitis NCTC 12261

42.605

95.772

0.408
  radA Streptococcus pneumoniae D39

42.667

95.137

0.406
  radA Streptococcus pneumoniae TIGR4

42.667

95.137

0.406
  radA Streptococcus pneumoniae R6

42.667

95.137

0.406
  radA Streptococcus pneumoniae Rx1

42.667

95.137

0.406
  radA Streptococcus mitis SK321

43.897

90.063

0.395