Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HYQ63_RS20705 Genome accession   NZ_CP058693
Coordinates   4910223..4910822 (-) Length   199 a.a.
NCBI ID   WP_009716708.1    Uniprot ID   A0A3M8X6R5
Organism   Streptomyces sp. Rer75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4905223..4915822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS20685 (HYQ63_20685) - 4905961..4906542 (-) 582 WP_179935296.1 SigE family RNA polymerase sigma factor -
  HYQ63_RS20690 (HYQ63_20690) - 4906917..4907993 (-) 1077 WP_179935297.1 aspartate-semialdehyde dehydrogenase -
  HYQ63_RS20695 (HYQ63_20695) - 4907990..4909270 (-) 1281 WP_009716710.1 aspartate kinase -
  HYQ63_RS20700 (HYQ63_20700) - 4909565..4910230 (-) 666 WP_179935298.1 DUF5063 domain-containing protein -
  HYQ63_RS20705 (HYQ63_20705) recR 4910223..4910822 (-) 600 WP_009716708.1 recombination mediator RecR Machinery gene
  HYQ63_RS20710 (HYQ63_20710) - 4910941..4911276 (-) 336 WP_123098234.1 YbaB/EbfC family nucleoid-associated protein -
  HYQ63_RS20715 (HYQ63_20715) - 4911455..4914079 (-) 2625 WP_179935299.1 DNA polymerase III subunit gamma and tau -
  HYQ63_RS20730 (HYQ63_20730) - 4914568..4914765 (-) 198 WP_179935300.1 hypothetical protein -
  HYQ63_RS20735 (HYQ63_20735) - 4914938..4915132 (-) 195 WP_179935301.1 hypothetical protein -
  HYQ63_RS20740 (HYQ63_20740) - 4915129..4915431 (-) 303 WP_257231986.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21799.09 Da        Isoelectric Point: 5.0034

>NTDB_id=406526 HYQ63_RS20705 WP_009716708.1 4910223..4910822(-) (recR) [Streptomyces sp. Rer75]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQSEPTDVRRLAHALTEVKEKVRFCAVCGNVAEAEQCRVCQDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=406526 HYQ63_RS20705 WP_009716708.1 4910223..4910822(-) (recR) [Streptomyces sp. Rer75]
GTGTACGAGGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGTCCGAGCCCACCGACGTCCGCCGCCTCGCTCACGCGCTGACCGAGGTCAAGGAGAAGGTGC
GGTTCTGCGCGGTGTGCGGGAACGTCGCCGAGGCCGAGCAGTGCCGGGTCTGCCAGGACCCGCGCCGCGACCCCGCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTTGTCGCGATCGAGCGGACCCGCGAGTTCCGCGGCCGCTATCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTGGGCCCGGACGATCTGCGGATCAGGGAGCTGCTGGCCCGGCTCGCGGACGGTA
CGGTCACGGAGCTGATCCTGGCCACCGATCCGAATCTGGAGGGTGAAGCCACCGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGGCTGAAGGTCACGCGCCTGGCCAGTGGTCTTCCCGTCGGGGGGGACCTGGAGTATGCCGACGAGGTCACGCT
GGGTCGTGCCTTCGAAGGGAGAAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M8X6R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452