Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   GO593_RS04760 Genome accession   NZ_CP046654
Coordinates   1003674..1004414 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998674..1009414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO593_RS04740 (GO593_04740) aroB 999216..1000298 (-) 1083 WP_001194003.1 3-dehydroquinate synthase -
  GO593_RS04745 (GO593_04745) aroK 1000327..1000896 (-) 570 WP_000643712.1 shikimate kinase AroK -
  GO593_RS04750 (GO593_04750) pilQ 1000908..1003073 (-) 2166 WP_001017037.1 type IV pilus secretin PilQ family protein Machinery gene
  GO593_RS04755 (GO593_04755) pilP 1003136..1003663 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  GO593_RS04760 (GO593_04760) pilO 1003674..1004414 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  GO593_RS04765 (GO593_04765) - 1004411..1005052 (-) 642 Protein_916 PilN domain-containing protein -
  GO593_RS04770 (GO593_04770) pilM 1005052..1006110 (-) 1059 WP_005143496.1 pilus assembly protein PilM Machinery gene
  GO593_RS04775 (GO593_04775) ponA 1006271..1008826 (+) 2556 WP_000736672.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=406475 GO593_RS04760 WP_000076101.1 1003674..1004414(-) (pilO) [Acinetobacter baumannii strain ATCC 19606]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=406475 GO593_RS04760 WP_000076101.1 1003674..1004414(-) (pilO) [Acinetobacter baumannii strain ATCC 19606]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment