Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GPA07_RS12695 Genome accession   NZ_CP046653
Coordinates   2442834..2443415 (-) Length   193 a.a.
NCBI ID   WP_008356936.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437834..2448415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS12665 (GPA07_12665) - 2437863..2438357 (-) 495 WP_008356946.1 molybdenum cofactor biosynthesis protein MoaE -
  GPA07_RS12670 (GPA07_12670) mobB 2438354..2438878 (-) 525 WP_157292624.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  GPA07_RS12675 (GPA07_12675) glp 2438860..2440134 (-) 1275 WP_197227317.1 gephyrin-like molybdotransferase Glp -
  GPA07_RS12680 (GPA07_12680) - 2440144..2441160 (-) 1017 WP_008356941.1 thiazole biosynthesis adenylyltransferase ThiF -
  GPA07_RS12685 (GPA07_12685) - 2441190..2441771 (-) 582 WP_071167684.1 molybdenum cofactor guanylyltransferase -
  GPA07_RS12690 (GPA07_12690) - 2441854..2442771 (+) 918 WP_071167685.1 sigmaE regulated sporulation protein -
  GPA07_RS12695 (GPA07_12695) rok 2442834..2443415 (-) 582 WP_008356936.1 transcriptional regulator Rok Regulator
  GPA07_RS12700 (GPA07_12700) - 2443897..2444355 (-) 459 WP_008356933.1 TlpA disulfide reductase family protein -
  GPA07_RS12705 (GPA07_12705) ahpA 2444636..2445178 (-) 543 WP_008356930.1 biofilm-specific peroxidase AhpA -
  GPA07_RS12710 (GPA07_12710) - 2445451..2446260 (+) 810 WP_157292628.1 mechanosensitive ion channel family protein -
  GPA07_RS12715 (GPA07_12715) - 2446282..2446524 (-) 243 WP_008356926.1 YkuS family protein -
  GPA07_RS12720 (GPA07_12720) - 2446575..2447750 (-) 1176 WP_071169170.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21860.84 Da        Isoelectric Point: 9.7309

>NTDB_id=406437 GPA07_RS12695 WP_008356936.1 2442834..2443415(-) (rok) [Bacillus sp. ms-22]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVTDTKKEVRTERKPDSLPVLAELAAQEMRSYQQ
PSQSQSTVTSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=406437 GPA07_RS12695 WP_008356936.1 2442834..2443415(-) (rok) [Bacillus sp. ms-22]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAACGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGGACAGGTCTAGTAACAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAACCGGATTCATTACCTGTATTAGCTGAGCTTGCTGCACAAGAAATGAGAAGCTACCAGCAG
CCTTCGCAATCGCAATCAACTGTTACATCATCTTTAGGAACAGGTCAGCTAAATGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGAAGAAGAGGCACAGCTCGACCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATCAAAACGTTAA
AGCGACATAATGCGGCGATTAAAAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment