Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GPA07_RS08205 Genome accession   NZ_CP046653
Coordinates   1574814..1575584 (+) Length   256 a.a.
NCBI ID   WP_157292323.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1569814..1580584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS08175 (GPA07_08175) - 1570141..1572231 (+) 2091 WP_174549253.1 HD family phosphohydrolase -
  GPA07_RS08180 (GPA07_08180) ybeY 1572232..1572711 (+) 480 WP_008356260.1 rRNA maturation RNase YbeY -
  GPA07_RS08185 (GPA07_08185) - 1572689..1573075 (+) 387 WP_157292322.1 diacylglycerol kinase family protein -
  GPA07_RS08190 (GPA07_08190) - 1573188..1573586 (+) 399 WP_008356263.1 cytidine deaminase -
  GPA07_RS08195 (GPA07_08195) era 1573579..1574484 (+) 906 WP_007501305.1 GTPase Era -
  GPA07_RS08200 (GPA07_08200) - 1574632..1574778 (+) 147 WP_008356266.1 YqzL family protein -
  GPA07_RS08205 (GPA07_08205) recO 1574814..1575584 (+) 771 WP_157292323.1 DNA repair protein RecO Machinery gene
  GPA07_RS08210 (GPA07_08210) glyQ 1575915..1576802 (+) 888 WP_142155518.1 glycine--tRNA ligase subunit alpha -
  GPA07_RS08215 (GPA07_08215) glyS 1576795..1578840 (+) 2046 WP_157292324.1 glycine--tRNA ligase subunit beta -
  GPA07_RS08220 (GPA07_08220) - 1579006..1579644 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  GPA07_RS08225 (GPA07_08225) - 1579670..1580491 (+) 822 WP_008356274.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29248.84 Da        Isoelectric Point: 7.7751

>NTDB_id=406425 GPA07_RS08205 WP_157292323.1 1574814..1575584(+) (recO) [Bacillus sp. ms-22]
MLIKTEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKANSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELLDKGTDEKKSNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVIGLKPELDQCVHCGQKEG
QFHFSIRDNGFICEHCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMRKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=406425 GPA07_RS08205 WP_157292323.1 1574814..1575584(+) (recO) [Bacillus sp. ms-22]
ATGCTCATTAAAACTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGGGCTAAAAAAGCTAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATCGAAAGCATGCGGGCC
ATCCGGGAGGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTCGATAAAGGAACAGATGAAAAGAAGTC
CAACCCTTACTTGTTTGAGCTCCTTCTTCAATCATTGCGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATAGGGCTGAAGCCTGAGCTTGATCAATGTGTACACTGCGGTCAAAAAGAAGGA
CAGTTCCATTTCTCGATTAGAGATAACGGATTCATCTGTGAGCATTGCTTTTCTAAAGATCCCTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTCCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATACGTCAAGTGCTCGATCACTACTATGACGAGTATTCAGGCCTTTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAGAAAGCTAATGGATGGCGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

74.219

100

0.742

Multiple sequence alignment