Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GPA07_RS05230 Genome accession   NZ_CP046653
Coordinates   1020557..1021198 (+) Length   213 a.a.
NCBI ID   WP_008357178.1    Uniprot ID   A0AAC9IGZ8
Organism   Bacillus sp. ms-22     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015557..1026198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS05205 (GPA07_05205) - 1015868..1016221 (-) 354 WP_034738645.1 hypothetical protein -
  GPA07_RS05210 (GPA07_05210) degQ 1016727..1016867 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  GPA07_RS05215 (GPA07_05215) - 1017020..1017934 (+) 915 WP_008357184.1 polyprenyl synthetase family protein -
  GPA07_RS05220 (GPA07_05220) comX 1017931..1018101 (+) 171 WP_008357181.1 competence pheromone ComX -
  GPA07_RS05225 (GPA07_05225) comP 1018155..1020476 (+) 2322 WP_008357179.1 ATP-binding protein Regulator
  GPA07_RS05230 (GPA07_05230) comA 1020557..1021198 (+) 642 WP_008357178.1 response regulator transcription factor Regulator
  GPA07_RS05235 (GPA07_05235) - 1021222..1021611 (+) 390 WP_008357176.1 hotdog fold thioesterase -
  GPA07_RS05240 (GPA07_05240) mnhG 1021706..1022080 (-) 375 WP_071168673.1 monovalent cation/H(+) antiporter subunit G -
  GPA07_RS05245 (GPA07_05245) - 1022064..1022345 (-) 282 WP_157292138.1 Na(+)/H(+) antiporter subunit F1 -
  GPA07_RS05250 (GPA07_05250) - 1022345..1022824 (-) 480 WP_008357170.1 Na+/H+ antiporter subunit E -
  GPA07_RS05255 (GPA07_05255) - 1022831..1024309 (-) 1479 WP_157292139.1 Na+/H+ antiporter subunit D -
  GPA07_RS05260 (GPA07_05260) - 1024302..1024643 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  GPA07_RS05265 (GPA07_05265) - 1024643..1025074 (-) 432 WP_008357166.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.60 Da        Isoelectric Point: 4.6407

>NTDB_id=406416 GPA07_RS05230 WP_008357178.1 1020557..1021198(+) (comA) [Bacillus sp. ms-22]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKKILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=406416 GPA07_RS05230 WP_008357178.1 1020557..1021198(+) (comA) [Bacillus sp. ms-22]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTCTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAAAAAATTCTAGAAACGAATCAACAAGTGAAAATTATT
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTGGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGCTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACATCCATCTTTAATAAGCTGAATGTAGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment