Detailed information NTG0406340

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: S9968_RS03580
• Genome accession: NZ_CP058666
• Coordinates: 622083..623192 (-)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae strain S9968
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 617083..628192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S9968_RS03555 (S9968_100713)	-	617599..618279 (+)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-
S9968_RS03560 (S9968_100714)	-	618289..618774 (+)	486	WP_001034427.1	arginine repressor	-
S9968_RS03565 (S9968_100715)	guaB	618931..620412 (+)	1482	WP_000073440.1	IMP dehydrogenase	-
S9968_RS03570 (S9968_100716)	-	620487..621149 (+)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
S9968_RS03575 (S9968_100717)	-	621205..622071 (+)	867	WP_000398683.1	GRP family sugar transporter	-
S9968_RS03580 (S9968_100718)	recF	622083..623192 (-)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
S9968_RS03585 (S9968_100719)	yaaA	623195..623548 (-)	354	WP_000384871.1	S4 domain-containing protein YaaA	-
S9968_RS03590 (S9968_100720)	yfmF	623787..625031 (+)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
S9968_RS03595 (S9968_100721)	yfmH	625033..626316 (+)	1284	WP_000217754.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
S9968_RS03600 (S9968_100722)	pgsA	626439..626981 (+)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
S9968_RS03605 (S9968_100723)	-	626981..627820 (+)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=406340 S9968_RS03580 WP_000264863.1 622083..623192(-) (recF) [Streptococcus agalactiae strain S9968]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=406340 S9968_RS03580 WP_000264863.1 622083..623192(-) (recF) [Streptococcus agalactiae strain S9968]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444