Detailed information NTG0406322

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GPA00_RS08250
• Genome accession: NZ_CP046629
• Coordinates: 1673206..1674435 (-)
• Length: 409 a.a.
• NCBI ID: WP_157328299.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain CNU G6
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1668206..1679435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPA00_RS08230 (GPA00_08230)	-	1669430..1670098 (+)	669	WP_029875966.1	DUF1275 family protein	-
GPA00_RS08235 (GPA00_08235)	mmuM	1670133..1671077 (-)	945	WP_157328295.1	homocysteine S-methyltransferase	-
GPA00_RS08240 (GPA00_08240)	-	1671090..1672466 (-)	1377	WP_157328297.1	amino acid permease	-
GPA00_RS08245 (GPA00_08245)	yihA	1672603..1673196 (-)	594	WP_004232043.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GPA00_RS08250 (GPA00_08250)	clpX	1673206..1674435 (-)	1230	WP_157328299.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GPA00_RS08255 (GPA00_08255)	-	1674472..1674642 (-)	171	WP_021142431.1	hypothetical protein	-
GPA00_RS08260 (GPA00_08260)	-	1674658..1675152 (-)	495	WP_157328301.1	dihydrofolate reductase	-
GPA00_RS08265 (GPA00_08265)	-	1675236..1676075 (-)	840	WP_021142433.1	thymidylate synthase	-
GPA00_RS08270 (GPA00_08270)	-	1676405..1677583 (+)	1179	WP_157328303.1	hydroxymethylglutaryl-CoA synthase	-
GPA00_RS08275 (GPA00_08275)	-	1677570..1678844 (+)	1275	WP_157328305.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45228.65 Da
• Isoelectric Point: 4.4317

>NTDB_id=406322 GPA00_RS08250 WP_157328299.1 1673206..1674435(-) (clpX) [Streptococcus equinus strain CNU G6]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQER
AKRALAVAVYNHYKRVSFAESRDEEDVELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNRKIDEDASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSREEVTRVRITKDAVEG
TDKPILETA

Nucleotide

• Length: 1230 bp

>NTDB_id=406322 GPA00_RS08250 WP_157328299.1 1673206..1674435(-) (clpX) [Streptococcus equinus strain CNU G6]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTTTGTGGAAAAAGCCAAGACGAAGTAAAAAAAATTAT
TGCAGGAAATAATGTCTTTATCTGTAATGAATGTGTGGCTTTATCCCAAGAGATTATTAAAGAAGAGTTAGCAGAAGAAG
TTCTTGCAGATTTGGCAGAAGTTCCAAAACCAAAAGAATTACTAGCTACTCTTGATGAATATGTTGTTGGTCAAGAACGT
GCAAAACGTGCTCTTGCAGTAGCAGTTTACAATCACTACAAGCGTGTATCTTTTGCTGAAAGTCGTGATGAAGAAGATGT
TGAATTGCAAAAATCAAACATTTTGCTTATCGGACCAACAGGGTCAGGGAAAACTTTCCTTGCTCAAACATTGGCTAAAA
GTCTTAATGTTCCATTTGCGATTGCAGATGCGACATCATTGACTGAAGCAGGATATGTCGGTGAAGACGTTGAAAATATC
CTTTTGAAACTGATTCAAGCAGCTGATTTTAATATTGAACGTGCTGAACGTGGTATTATCTACGTCGATGAAATTGATAA
AATCGCCAAAAAAGGTGAAAATGTTTCAATTACTCGTGACGTTTCAGGTGAAGGTGTTCAACAAGCTCTCCTTAAAATCA
TTGAAGGAACAGTTGCTAGCGTACCACCACAAGGTGGACGTAAACACCCTAACCAAGAAATGATTCAAATTGATACCAAG
AACATTCTTTTCATCGTTGGTGGTGCGTTTGATGGTATCGAAGATATTGTTAAACAACGTCTTGGTGAAAAAATTATTGG
TTTTGGTCAAAATAACCGTAAAATTGATGAAGATGCATCTTATATGCAAGAAATCATCTCAGAAGATATTCAAAAATTTG
GTCTTATTCCAGAGTTTATCGGACGCTTGCCTGTAGTAGCTGCGCTTGAACAATTGACTGCGGATGATTTGGTTCGCATC
TTGACTGAACCTCGCAATGCCTTGGTTAAACAATACCAAACATTGCTATCTTATGATGGTGTTGAGTTGGAATTTGATGA
AGATGCTCTTCAAGCAATTGCCAATAAAGCTATCGAACGTAAGACAGGCGCGCGTGGACTTCGTTCAATTATTGAAGAAA
CAATGATGGATATCATGTTTGAAATTCCTAGTCGCGAAGAAGTTACCAGAGTTCGCATCACTAAAGATGCTGTCGAAGGT
ACTGATAAACCTATCTTAGAAACTGCATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	90.22	100	0.902
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577