Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GPA00_RS06035 Genome accession   NZ_CP046629
Coordinates   1193370..1195172 (+) Length   600 a.a.
NCBI ID   WP_157327870.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188370..1200172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS06010 (GPA00_06010) - 1188616..1190181 (+) 1566 WP_157327863.1 sensor histidine kinase -
  GPA00_RS06015 (GPA00_06015) - 1190162..1190767 (+) 606 WP_024344287.1 response regulator -
  GPA00_RS06020 (GPA00_06020) nagB 1190905..1191609 (+) 705 WP_157327865.1 glucosamine-6-phosphate deaminase -
  GPA00_RS06025 (GPA00_06025) - 1191642..1192358 (+) 717 WP_157327867.1 pseudouridine synthase -
  GPA00_RS06030 (GPA00_06030) coiA 1192408..1193370 (+) 963 WP_157327869.1 competence protein CoiA Machinery gene
  GPA00_RS06035 (GPA00_06035) pepF 1193370..1195172 (+) 1803 WP_157327870.1 oligoendopeptidase F Regulator
  GPA00_RS06040 (GPA00_06040) - 1195247..1195762 (+) 516 WP_157327872.1 GNAT family N-acetyltransferase -
  GPA00_RS06045 (GPA00_06045) - 1195764..1196375 (+) 612 WP_094140898.1 HAD-IA family hydrolase -
  GPA00_RS06050 (GPA00_06050) - 1196427..1197128 (+) 702 WP_157327874.1 O-methyltransferase -
  GPA00_RS06055 (GPA00_06055) - 1197197..1198258 (+) 1062 WP_157327876.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69377.41 Da        Isoelectric Point: 4.6641

>NTDB_id=406315 GPA00_RS06035 WP_157327870.1 1193370..1195172(+) (pepF) [Streptococcus equinus strain CNU G6]
MSDNRSHIDEKYKWDLSTVFATDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPELSAYAHFFEKLFKRQEHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDIIHKADQNGEVLTSEY
LNSIYAVLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTSDDINRYLDYLKAGNSDYPL
NVIKKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=406315 GPA00_RS06035 WP_157327870.1 1193370..1195172(+) (pepF) [Streptococcus equinus strain CNU G6]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGCAACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTTGCTAAATACCAAGAATTCGAAGCAAAAGCAACAACACTTTACGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGATGATTTCGCCAAATTTGTGGCTGAAACACCAGAGCTTTCAGCTT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGAACACGTTTTGTCACAAAAAGAAGAAGAGCTGCTAGCAGGGGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTTTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
TGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAGGCTATGTATGCTACGTATGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCAGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGCTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCATACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTCTGAAA
AAAGCAGAAGAGGTTTTGTCTGTTTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAACAAAGGAAAACGTTCAGGAGCTTATTCTGGTGGGGCTTATGATACAAATGCCTTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTCACTTTGGTACACGAAACAGGGCACAGCCTTCATTCGACTTTTACGCGTGAAACT
CAACCATACGTTTACGGTGATTACAGCATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTTTTAAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCACTACTTGGACGGATTCAAAGGAACTATTT
TCCGTCAAGCACAATTTGCTGAATTTGAAGATATTATCCATAAAGCTGACCAAAATGGTGAAGTTTTGACGAGTGAATAT
CTCAATAGCATTTATGCTGTCTTAAATGAAAAATACTACGGACTCAGCAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTACTATGTTTATCAATATGCGACAGGTTTTGCGGCAGCAAGTTATCTAGCTG
ACAAAGTAGTTCACGGTACATCAGATGACATTAACCGCTACCTTGACTATCTCAAGGCTGGTAATTCTGATTATCCGTTA
AATGTGATTAAAAAAGCTGGTGTGGACATGACAAGCAGTGACTATTTGGATGCTGCATTCAAGATTTTTGAAGAACGTCT
AAATGAATTAGAAACTTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71

100

0.71

Multiple sequence alignment