Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSUJS14_RS10490 Genome accession   NC_017618
Coordinates   2123546..2124640 (+) Length   364 a.a.
NCBI ID   WP_012028050.1    Uniprot ID   A0A0H3N2H6
Organism   Streptococcus suis JS14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2118546..2129640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUJS14_RS10465 (SSUJS14_2122) pgsA 2119065..2119604 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSUJS14_RS10470 (SSUJS14_2123) rodZ 2119614..2120471 (-) 858 WP_012028600.1 cytoskeleton protein RodZ -
  SSUJS14_RS10475 (SSUJS14_2124) - 2120553..2121836 (-) 1284 WP_012775413.1 pitrilysin family protein -
  SSUJS14_RS10480 (SSUJS14_2125) - 2121833..2123086 (-) 1254 WP_012028048.1 pitrilysin family protein -
  SSUJS14_RS10485 (SSUJS14_2126) yaaA 2123160..2123543 (+) 384 WP_012028049.1 S4 domain-containing protein YaaA -
  SSUJS14_RS10490 (SSUJS14_2127) recF 2123546..2124640 (+) 1095 WP_012028050.1 DNA replication/repair protein RecF Machinery gene
  SSUJS14_RS10495 (SSUJS14_2128) guaB 2124912..2126393 (-) 1482 WP_012028051.1 IMP dehydrogenase -
  SSUJS14_RS10500 (SSUJS14_2129) trpS 2126625..2127650 (-) 1026 WP_012775414.1 tryptophan--tRNA ligase -
  SSUJS14_RS10505 (SSUJS14_2131) - 2128005..2128877 (+) 873 WP_014636538.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=40630 SSUJS14_RS10490 WP_012028050.1 2123546..2124640(+) (recF) [Streptococcus suis JS14]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=40630 SSUJS14_RS10490 WP_012028050.1 2123546..2124640(+) (recF) [Streptococcus suis JS14]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment