Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GPA00_RS02685 Genome accession   NZ_CP046629
Coordinates   548950..549678 (+) Length   242 a.a.
NCBI ID   WP_074450871.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543950..554678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02660 (GPA00_02660) rpmF 544370..544546 (+) 177 WP_003066947.1 50S ribosomal protein L32 -
  GPA00_RS02665 (GPA00_02665) rpmG 544563..544712 (+) 150 WP_002262412.1 50S ribosomal protein L33 -
  GPA00_RS02670 (GPA00_02670) - 544815..545141 (+) 327 WP_232524228.1 hypothetical protein -
  GPA00_RS02675 (GPA00_02675) treC 545115..546767 (-) 1653 WP_157327456.1 alpha,alpha-phosphotrehalase -
  GPA00_RS02680 (GPA00_02680) treP 546779..548755 (-) 1977 WP_157327463.1 PTS system trehalose-specific EIIBC component -
  GPA00_RS02685 (GPA00_02685) treR 548950..549678 (+) 729 WP_074450871.1 trehalose operon repressor Regulator
  GPA00_RS02690 (GPA00_02690) - 549768..550103 (+) 336 WP_157327465.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  GPA00_RS02695 (GPA00_02695) - 550130..550498 (-) 369 WP_157327467.1 DUF5085 family protein -
  GPA00_RS02700 (GPA00_02700) - 550527..550835 (-) 309 WP_157327469.1 DUF4176 domain-containing protein -
  GPA00_RS02705 (GPA00_02705) - 550828..551709 (-) 882 WP_157327471.1 hypothetical protein -
  GPA00_RS02710 (GPA00_02710) - 551715..553400 (-) 1686 WP_198362633.1 T7SS effector LXG polymorphic toxin -
  GPA00_RS02715 (GPA00_02715) - 553303..553965 (-) 663 WP_033153591.1 DUF4176 domain-containing protein -
  GPA00_RS02720 (GPA00_02720) - 553965..554246 (-) 282 WP_024344449.1 hypothetical protein -
  GPA00_RS02725 (GPA00_02725) - 554258..554674 (-) 417 WP_039691243.1 DUF5082 family protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27883.02 Da        Isoelectric Point: 9.2834

>NTDB_id=406285 GPA00_RS02685 WP_074450871.1 548950..549678(+) (treR) [Streptococcus equinus strain CNU G6]
MKKYEHIYHILEKDITSGVYSAGDYLPTENELCTQYHVSRDTVRKALSLLAEARLIKKIHGSGSQVIKRETIDFPVSKLT
SYKELVDNFGINSKTNVISIDKLIVDEKLAALTGFSKNSLVWRVIRQRVVDGTASVIDIDYLDKKIVPNMTREIAEKSIY
DYLENQLHLSIAYAQKEITIDQLNDRDKLLLDIGAEHHVVSIKSKVYLANNQQFQFTESRHKLEKFRFVDFATRKNLLPT
KH

Nucleotide


Download         Length: 729 bp        

>NTDB_id=406285 GPA00_RS02685 WP_074450871.1 548950..549678(+) (treR) [Streptococcus equinus strain CNU G6]
ATGAAGAAATACGAGCACATTTATCACATTTTAGAAAAAGACATCACATCAGGAGTCTATTCAGCTGGTGATTATCTTCC
TACCGAAAATGAACTCTGTACACAATATCATGTCAGTCGCGACACCGTCCGTAAAGCATTGAGCTTGCTTGCCGAAGCAA
GACTAATCAAGAAAATTCACGGCTCTGGTTCACAAGTTATCAAACGCGAAACGATTGACTTTCCTGTTTCAAAATTAACA
AGCTATAAAGAGCTTGTCGACAACTTCGGTATTAATTCTAAAACCAACGTCATCTCCATTGATAAGCTGATTGTCGATGA
AAAATTAGCTGCGCTGACAGGATTCTCAAAAAACAGCTTAGTCTGGCGCGTGATTCGCCAACGTGTGGTTGATGGAACAG
CTTCTGTTATTGATATTGATTATTTAGATAAAAAAATCGTGCCAAATATGACCCGAGAAATTGCAGAGAAATCTATTTAC
GATTATCTTGAAAATCAACTCCATCTGAGCATCGCTTATGCTCAAAAAGAAATTACCATCGACCAGCTTAACGACCGTGA
CAAACTACTTCTTGATATTGGTGCTGAGCACCACGTCGTTTCAATCAAATCAAAAGTCTATCTTGCCAATAATCAACAGT
TTCAGTTCACCGAAAGTAGACACAAACTTGAAAAATTCCGCTTTGTGGATTTTGCAACACGAAAAAACTTGCTACCGACC
AAACATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.231

96.694

0.669

Multiple sequence alignment