Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UMN179_RS06230 Genome accession   NC_015460
Coordinates   1336088..1337284 (-) Length   398 a.a.
NCBI ID   WP_013746030.1    Uniprot ID   F4H9U4
Organism   Gallibacterium anatis UMN179     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1335252..1335539 1336088..1337284 flank 549


Gene organization within MGE regions


Location: 1335252..1337284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS12860 (UMN179_01229) - 1335252..1335904 (+) 653 Protein_1212 IS1595 family transposase -
  UMN179_RS06230 (UMN179_01231) dprA 1336088..1337284 (-) 1197 WP_013746030.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 43479.92 Da        Isoelectric Point: 6.5702

>NTDB_id=40618 UMN179_RS06230 WP_013746030.1 1336088..1337284(-) (dprA) [Gallibacterium anatis UMN179]
MQTVTTLLRLALLPQFGAIKIQQLLEQISLDTLLSYDRQTLSQIGWNTAQIQAWFSPPQAIIDTVLNWQQQADNHILHYF
DHSYPFLLKQTRSAPPLLFVKGNIDVLSSPQIAMVGSRYCSPYGEHYAQTIAGELVHSGITINSGLALGIDGICHRAALD
NHGKTIAVLGSGLNELYPARHKKLAQQILENNGALLSELFPDTPPIAENFPRRNRIISGLSFGTIVIEASQKSGSLITAR
LALEQNREVFAVPGALDNPLSQGCHHLIKQGAWLIENAQDVLEILTPQISSLMPFTPAMEIQTPTGNRATAQSTIAISPQ
AKSGYTPPTINKKAVIKLDIPPQHQALMQQLNSATAISPDELSTALNRPIDQILTDLLELEILGAVQQIQGGYIKNIV

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=40618 UMN179_RS06230 WP_013746030.1 1336088..1337284(-) (dprA) [Gallibacterium anatis UMN179]
ATGCAAACAGTAACCACACTTTTACGTTTAGCACTGCTGCCACAATTCGGTGCTATCAAAATTCAACAACTGCTTGAACA
AATCTCACTAGATACGCTGCTCAGCTACGATCGACAAACACTCAGCCAAATCGGTTGGAACACTGCGCAAATTCAGGCTT
GGTTTTCACCGCCGCAAGCGATTATCGACACCGTTCTGAATTGGCAACAACAGGCAGACAACCATATTCTGCACTATTTT
GATCACAGTTACCCATTTTTGTTGAAACAAACTCGCTCCGCACCACCATTGCTGTTTGTTAAAGGTAACATTGATGTACT
TTCTTCTCCACAAATCGCTATGGTAGGTAGTCGCTATTGTTCACCTTATGGCGAACATTACGCCCAAACTATTGCCGGCG
AATTGGTACATAGCGGAATTACTATCAACAGCGGTTTAGCCTTAGGCATTGACGGCATTTGTCATCGTGCCGCTTTGGAT
AATCACGGTAAAACCATTGCCGTTTTGGGCAGTGGATTGAATGAACTCTATCCGGCTCGCCACAAAAAATTGGCACAACA
GATTCTAGAAAACAACGGTGCATTGCTGTCGGAACTGTTCCCCGACACACCTCCCATTGCAGAAAATTTTCCACGCCGAA
ACCGAATTATCAGCGGTCTCTCGTTCGGCACCATCGTCATCGAAGCCTCACAAAAAAGCGGTTCATTAATTACTGCACGT
CTGGCATTGGAACAAAATCGCGAAGTGTTCGCCGTTCCAGGTGCATTGGACAATCCATTGAGTCAAGGTTGCCATCACTT
AATCAAACAAGGGGCGTGGTTAATTGAAAATGCACAGGATGTATTAGAGATTCTAACACCGCAAATTTCATCATTAATGC
CGTTTACACCAGCAATGGAGATACAAACGCCAACCGGCAATCGTGCTACTGCACAAAGCACGATCGCAATATCACCACAA
GCAAAATCCGGTTACACGCCGCCGACCATCAACAAAAAAGCGGTGATCAAACTTGATATTCCGCCACAACATCAAGCATT
AATGCAACAATTAAACAGTGCAACCGCGATTTCACCGGATGAACTTTCGACAGCATTAAATCGCCCTATCGATCAAATTC
TTACCGATCTATTGGAACTGGAAATTCTCGGTGCAGTGCAACAAATCCAAGGAGGTTATATTAAAAATATCGTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)

DprA winged helix domain (DprA_WH)

(342-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4H9U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

49.492

98.995

0.49
  dprA Haemophilus influenzae Rd KW20

51.087

92.462

0.472
  dprA Vibrio campbellii strain DS40M4

43.59

97.99

0.427

Multiple sequence alignment