Detailed information NTG0406169

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GO995_RS05490
• Genome accession: NZ_CP046624
• Coordinates: 1082363..1084471 (+)
• Length: 702 a.a.
• NCBI ID: WP_157629090.1
• Uniprot ID: -
• Organism: Streptococcus ruminicola strain CNU_G3
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1077363..1089471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO995_RS05460 (GO995_05460)	-	1078338..1079279 (+)	942	WP_157629087.1	polysaccharide deacetylase family protein	-
GO995_RS05465 (GO995_05465)	-	1079319..1079507 (-)	189	WP_157629088.1	hypothetical protein	-
GO995_RS05470 (GO995_05470)	-	1079952..1080353 (+)	402	WP_238385856.1	TetR-like C-terminal domain-containing protein	-
GO995_RS05475 (GO995_05475)	-	1080386..1080712 (-)	327	WP_157629089.1	hypothetical protein	-
GO995_RS05480 (GO995_05480)	rplL	1080858..1081226 (-)	369	WP_004232036.1	50S ribosomal protein L7/L12	-
GO995_RS05485 (GO995_05485)	rplJ	1081295..1081798 (-)	504	WP_039696786.1	50S ribosomal protein L10	-
GO995_RS05490 (GO995_05490)	clpC	1082363..1084471 (+)	2109	WP_157629090.1	AAA family ATPase	Regulator
GO995_RS05495 (GO995_05495)	-	1084675..1085343 (+)	669	WP_157629499.1	YoaK family protein	-
GO995_RS05500 (GO995_05500)	mmuM	1085375..1086319 (-)	945	WP_157629091.1	homocysteine S-methyltransferase	-
GO995_RS05505 (GO995_05505)	-	1086330..1087706 (-)	1377	WP_157629092.1	amino acid permease	-
GO995_RS05510 (GO995_05510)	yihA	1087843..1088436 (-)	594	WP_074560304.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77296.17 Da
• Isoelectric Point: 4.7266

>NTDB_id=406169 GO995_RS05490 WP_157629090.1 1082363..1084471(+) (clpC) [Streptococcus ruminicola strain CNU_G3]
MANNQFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNADYQEGAPTSVPKEDGILAK
LGTNLTERARNNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNMIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDVKSLEKEIAEQKEKQEAAAAKEDYEAALNAKVRIEELQKQIDNHTEDKKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVDAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQEDKDVKIMDRIAPYFRPEFLNRFNGIIEFSHLTKDDLNEIVDLMLAEVSKTIAKKGIDLV
VSDDAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide

• Length: 2109 bp

>NTDB_id=406169 GO995_RS05490 WP_157629090.1 1082363..1084471(+) (clpC) [Streptococcus ruminicola strain CNU_G3]
ATGGCAAACAATCAATTTTACGGAAGAGATCCTTTTGGAAATATGGATGATATCTTCAACCAATTAATGGGAAACATGGG
AGGCTATAACTCAGAAAATAAACGCTACCTAATCAATGGTCGCGAAGTAACCCCTGAAGAATTTGCGCAATACCGTCAAA
CTGGTAAACTCCCAGGAAATGCTGATTATCAAGAAGGTGCTCCTACTTCTGTACCTAAAGAAGATGGTATCTTGGCTAAA
CTTGGAACAAACTTAACTGAACGTGCTCGTAACAACGAACTCGATCCCGTTATCGGACGTAACAAGGAAATTCAAGAAAC
AGCTGAAATCTTGTCTCGTCGTACAAAGAACAACCCAGTTCTAGTCGGGGATGCTGGTGTTGGTAAAACAGCTGTCGTTG
AAGGATTAGCGCAAGCTATTGTTAACGGTGATGTGCCTGCTGCTATCAAGAACAAAGAAATCATCTCAATTGATATTTCA
GGCCTTGAGGCTGGTACACAATACCGTGGTGCTTTCGAAGAAAACATCCAAAACATGATTAAAGAAGTCAAAGACGCTGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTCTTGGAGCTGGTTCAACTGGTGGCGACTCTGGTTCTAAAGGTC
TAGCAGATATTCTTAAACCTGCTCTCTCTCGTGGTGAATTGACTGTTATTGGTGCGACTACACAAGACGAATACCGCAAT
ACCATTTTGAAAAATGCTGCGCTCGCTCGTCGTTTCAACGAAGTTAAAGTTAACGCTCCTTCTGCTCAAGACAGCTTTAA
CATCTTGATGGGTATTCGTGATTTGTACGAAAAACACCACAATGTTATCCTTCCAGATAACGTTTTGAAAGCTGCCGTTG
ACTTTTCAATCCAATACATTCCACAACGTAGTTTACCAGATAAAGCAATTGACTTAATCGATATGACTGCTGCTCACCTA
GCTGCACAACATCCTGTAACTGATGTCAAATCTTTGGAAAAAGAAATTGCAGAACAAAAAGAAAAACAAGAAGCCGCTGC
CGCTAAAGAAGATTACGAAGCAGCTCTTAATGCCAAAGTGCGTATCGAAGAATTGCAAAAACAAATCGATAATCACACTG
AAGACAAGAAAGTTACTGCTACCGTTAATGACGTTGCTGAATCCGTTGAACGTCTAACTGGTGTGCCTGTTTCAAACATG
GGCGCAAGCGACATCGAACGTTTGAAAGAATTGGCTAGTCGTTTGAAAGGTAAAGTCATTGGTCAAGACGAAGCTGTAGA
TGCTGTTGCTCGTGCTATTCGCCGTAACCGTGCTGGTTTTGATGAAGGAAACCGACCAATTGGTAGCTTCCTCTTCGTAG
GTCCTACTGGTGTTGGTAAGACAGAACTTGCTAAACAATTGGCTCTTGATATGTTTGGCTCAAAAGATGCAATCATCCGT
CTAGACATGTCTGAGTACTCTGACCGCACAGCCGTTTCTAAGTTGATTGGTACAACTGCTGGTTATGTTGGTTACGATGA
CAACAATAACACACTTACTGAACGTGTTCGTCGTAATCCTTACTCAATCGTTCTTCTTGATGAAATTGAAAAAGCCGACC
CACAAGTTATTACACTTCTTCTTCAAGTTTTGGACGATGGTCGTTTGACTGATGGTCAAGGTAATACAATTAACTTCAAG
AACACCGTTATCATTGCTACATCTAACGCTGGCTTTGGTAATGAAGCTTTGACTGGTCAAGAAGACAAAGATGTGAAGAT
TATGGATCGTATCGCTCCATACTTCCGTCCGGAATTCCTTAACCGTTTCAACGGTATCATAGAATTCTCTCACTTGACTA
AGGATGACTTGAACGAAATCGTTGACTTGATGCTAGCTGAAGTTAGCAAGACTATCGCTAAGAAAGGTATTGATTTGGTT
GTCAGCGATGATGCTAAACAACACCTTATCGAAGAAGGTTACGATGAAGCTATGGGTGTTCGACCACTCCGCCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGATTTCTACCTTGATCACACAGATGTTAAACACCTTAAAGCTGATATGGTTG
ACGGAGAACTTGTTATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (262-355)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.08	100	0.481
clpE	Streptococcus mutans UA159	50.551	90.456	0.457
clpE	Streptococcus pneumoniae Rx1	49.449	90.456	0.447
clpE	Streptococcus pneumoniae D39	49.449	90.456	0.447
clpE	Streptococcus pneumoniae R6	49.449	90.456	0.447
clpE	Streptococcus pneumoniae TIGR4	49.371	90.598	0.447
clpC	Bacillus subtilis subsp. subtilis str. 168	46.047	91.88	0.423
clpC	Streptococcus pneumoniae TIGR4	44.127	89.744	0.396
clpC	Streptococcus pneumoniae Rx1	43.354	90.028	0.39
clpC	Streptococcus pneumoniae D39	43.354	90.028	0.39
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.296	88.177	0.382
clpC	Streptococcus thermophilus LMG 18311	43.226	88.319	0.382
clpC	Streptococcus thermophilus LMD-9	43.112	87.892	0.379
clpC	Streptococcus mutans UA159	42.765	88.604	0.379