Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   GO600_RS00385 Genome accession   NZ_CP046617
Coordinates   63218..65287 (-) Length   689 a.a.
NCBI ID   WP_038050738.1    Uniprot ID   -
Organism   Thermus antranikianii strain JCM 19900     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58218..70287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO600_RS00365 (GO600_00365) mnmG 59132..60925 (+) 1794 WP_028493653.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  GO600_RS00370 (GO600_00370) rsmG 60960..61688 (+) 729 WP_028493654.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GO600_RS00375 (GO600_00375) soj 61682..62434 (+) 753 WP_028493655.1 chromosome-partitioning ATPase Soj -
  GO600_RS00380 (GO600_00380) - 62418..63230 (+) 813 WP_028493656.1 ParB/RepB/Spo0J family partition protein -
  GO600_RS00385 (GO600_00385) comA/comEC 63218..65287 (-) 2070 WP_038050738.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GO600_RS00390 (GO600_00390) comEA 65274..65582 (-) 309 WP_028493658.1 ComEA family DNA-binding protein Machinery gene
  GO600_RS00395 (GO600_00395) - 65555..66205 (-) 651 WP_028493659.1 YcxB family protein -
  GO600_RS00400 (GO600_00400) - 66229..66879 (+) 651 WP_028493660.1 glycerophosphodiester phosphodiesterase -
  GO600_RS00405 (GO600_00405) - 66890..67420 (+) 531 WP_028493661.1 inorganic diphosphatase -
  GO600_RS00410 (GO600_00410) - 67506..68003 (+) 498 WP_028493662.1 hypothetical protein -
  GO600_RS00415 (GO600_00415) rsmI 68005..68817 (+) 813 WP_028493663.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GO600_RS00420 (GO600_00420) pfkA 68814..69782 (+) 969 WP_028493664.1 6-phosphofructokinase -
  GO600_RS00425 (GO600_00425) - 69810..70265 (-) 456 WP_028493665.1 hypothetical protein -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 73964.84 Da        Isoelectric Point: 10.5544

>NTDB_id=406052 GO600_RS00385 WP_038050738.1 63218..65287(-) (comA/comEC) [Thermus antranikianii strain JCM 19900]
MSGPRAVFPKPLLSTWGPGVGLGLGGLLGAWGLFHPWVLLLAPFLLPLLRLPLAFGLVLVLLRGLLFPVPEPPYGTRLEG
VFTLHQGTILWQGHRLWVQHYPGLEDGRYRLRGYLAPPQGKRNPGGFDQRTWLLSRGIRGVFHVERAEPLAPLPDPRAPF
RARLAQGLSPPALEVLEGLVLGDKRELEDTYAQFQKAGIAHLLALSGLHVGFLVASLVFLLTPLGRWRYLLALLALPFYL
WLAGPSPSLVRASLMAGLSLLGLFLGLGAAGVLQALGLALFLQLLWWPASLLSLSLQLSYLAVAGIALLLPALPRPQGAR
GYLTGALLTSLAAQVPLVPLLLDRFGFLPLLSPLSNLLALPLASLLVPLGFLKLFLGGLLAPLLEPLARALLLLAQAASR
GPLLSWGEISPLGFALYYLGLFPLALALHRLLPWRKALLLASLPLLVSLLASWPKPLDLFALDVGQGDALLARLGGAEVL
VDGGRPEQGEKVVRALRALGVEALEVLVATHPDADHHGGLLKVAEEVPIGLALLSPAFPKEHPLVQALQSRKVPILFPGT
GTRLRVGKGSLEVLWPPGPQADDNQSGLVLLLDFAGPKALLLADVPAEVEKRLSPPRVAVVKVSHHGSRTSTEAGLLERA
RPQVALIGVGRNPHGHPYPEVLKRLAHHGVKVYRTDQNGAVRVLFGYAW

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=406052 GO600_RS00385 WP_038050738.1 63218..65287(-) (comA/comEC) [Thermus antranikianii strain JCM 19900]
ATGTCCGGCCCTAGGGCAGTCTTCCCCAAGCCTCTCCTCTCCACCTGGGGTCCAGGGGTGGGCCTGGGTCTAGGCGGGCT
CCTGGGAGCCTGGGGACTTTTCCATCCCTGGGTCCTTCTCCTAGCGCCCTTCCTCCTCCCCCTCCTCCGACTTCCCTTGG
CCTTTGGGCTCGTTCTGGTCCTCCTCCGGGGCCTCCTCTTCCCCGTACCGGAACCCCCTTACGGCACCCGCCTCGAGGGT
GTCTTCACCCTCCACCAAGGCACGATCCTCTGGCAGGGACACAGGCTTTGGGTGCAGCACTACCCGGGCCTGGAGGATGG
CCGCTACCGGCTGCGGGGGTACCTGGCTCCACCCCAGGGCAAGCGCAACCCCGGGGGCTTTGACCAGCGCACCTGGCTCC
TCTCCCGGGGGATAAGGGGGGTGTTTCACGTGGAACGGGCGGAACCCCTGGCTCCGCTTCCCGATCCTCGGGCTCCCTTC
CGTGCCCGCCTGGCGCAGGGGCTCTCGCCCCCTGCCCTCGAGGTACTGGAGGGGCTGGTCCTGGGGGACAAAAGGGAACT
CGAGGACACCTACGCCCAGTTCCAAAAGGCAGGGATCGCCCATCTCCTGGCCCTCTCGGGCCTCCACGTGGGCTTTCTGG
TGGCAAGCCTGGTTTTCCTTCTCACCCCTTTGGGCCGATGGCGCTACCTCCTGGCCCTCCTCGCTCTACCCTTTTACCTC
TGGCTGGCGGGGCCAAGCCCCTCCTTGGTGCGGGCCAGCCTCATGGCCGGGTTATCCCTCCTGGGCCTCTTCCTCGGCCT
TGGAGCCGCCGGGGTGCTCCAGGCCCTGGGCCTCGCCCTCTTTCTCCAGCTCCTGTGGTGGCCCGCAAGCCTGCTAAGCC
TTTCCCTCCAGCTCTCCTACCTGGCGGTTGCGGGGATCGCCCTCCTCCTGCCCGCCCTTCCCCGACCCCAGGGGGCACGG
GGGTACCTAACAGGAGCCCTTCTCACCAGCCTGGCAGCCCAGGTCCCCCTGGTTCCCCTTCTCCTTGACCGCTTCGGCTT
CCTACCCCTCCTCTCCCCCCTCAGCAACCTCCTGGCCCTGCCCCTGGCCTCCCTCCTGGTACCCCTGGGATTCCTCAAGC
TCTTCCTTGGGGGTCTTCTGGCACCCCTTCTGGAACCTTTGGCCAGGGCCCTCCTTCTCCTGGCTCAGGCCGCAAGCCGT
GGCCCACTCTTAAGCTGGGGGGAAATCTCCCCTTTGGGCTTCGCCCTCTACTACCTTGGGCTTTTCCCCTTGGCCCTGGC
CCTGCACCGGCTTCTCCCCTGGCGGAAAGCCCTCCTCCTTGCCAGCCTTCCCCTTCTGGTCAGCCTCCTCGCCTCCTGGC
CCAAGCCCCTGGACCTCTTTGCCCTGGACGTGGGCCAGGGGGATGCCCTGCTGGCCCGGCTGGGTGGGGCCGAGGTGCTG
GTGGACGGGGGCCGGCCCGAGCAAGGGGAAAAGGTGGTGCGGGCCCTAAGGGCCCTGGGGGTGGAGGCCCTCGAGGTCCT
GGTGGCCACCCACCCCGATGCCGACCATCACGGAGGCCTCCTTAAGGTGGCCGAGGAGGTTCCCATCGGCCTCGCTCTCC
TCTCCCCCGCCTTCCCAAAGGAGCACCCCCTGGTCCAGGCCCTGCAAAGCCGGAAGGTGCCCATCCTCTTCCCCGGAACC
GGTACCCGGCTTCGCGTGGGAAAAGGGAGCCTCGAGGTCCTCTGGCCCCCTGGCCCGCAAGCAGACGACAACCAAAGCGG
CCTGGTCCTCCTCCTGGACTTCGCCGGGCCCAAGGCCCTCCTCCTGGCCGATGTACCCGCGGAGGTGGAGAAAAGGCTAA
GCCCCCCACGGGTGGCCGTGGTTAAGGTGAGCCACCACGGCTCCCGCACGAGCACGGAAGCCGGTCTCCTGGAACGCGCC
CGGCCCCAGGTGGCCTTAATAGGCGTGGGAAGGAACCCCCATGGCCACCCCTACCCCGAGGTCTTGAAGCGCCTGGCCCA
CCATGGGGTAAAGGTCTACCGCACCGACCAAAACGGCGCGGTGCGGGTCCTTTTTGGCTACGCCTGGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(179-430)

Domain of unknown function (DUF4131) (DUF4131)

(108-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(463-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

69.333

97.968

0.679

Multiple sequence alignment