Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   GO602_RS16405 Genome accession   NZ_CP046602
Coordinates   3551682..3554441 (-) Length   919 a.a.
NCBI ID   WP_124181122.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546682..3559441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS16380 (GO602_16370) - 3546989..3547648 (-) 660 WP_124181124.1 SPOR domain-containing protein -
  GO602_RS16385 (GO602_16375) folC 3547652..3548941 (-) 1290 WP_121305554.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  GO602_RS16390 (GO602_16380) accD 3548938..3549810 (-) 873 WP_023123101.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  GO602_RS16395 (GO602_16385) - 3550078..3550713 (-) 636 WP_024914999.1 phosphoribosylanthranilate isomerase -
  GO602_RS16400 (GO602_16390) truA 3550803..3551660 (-) 858 WP_168334417.1 tRNA pseudouridine(38-40) synthase TruA -
  GO602_RS16405 (GO602_16395) fimV 3551682..3554441 (-) 2760 WP_124181122.1 motility hub landmark protein FimV Machinery gene
  GO602_RS16410 (GO602_16400) - 3554610..3555620 (-) 1011 WP_124181121.1 aspartate-semialdehyde dehydrogenase -
  GO602_RS16415 (GO602_16405) asd 3555722..3556834 (-) 1113 WP_024914996.1 aspartate-semialdehyde dehydrogenase -
  GO602_RS16420 (GO602_16410) leuB 3556904..3557986 (-) 1083 WP_024914995.1 3-isopropylmalate dehydrogenase -
  GO602_RS16425 (GO602_16415) - 3558045..3558806 (-) 762 WP_024914994.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96976.14 Da        Isoelectric Point: 3.9290

>NTDB_id=405962 GO602_RS16405 WP_124181122.1 3551682..3554441(-) (fimV) [Pseudomonas aeruginosa strain CMC-115]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASVPQAPVSAPRATSAPRAPQ
APAPLRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPAKVDATDSLRLVSGEGKASKGADKGGKGDNKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAVQPDAAQSNAAAQAPAQAGT
PAVAAPTPAPAGEAPATPAQPPVAQPPAPAAEKPPAPAVPVQAPEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMIL
SRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAA
ELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELD
SFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLDGDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDL
DFGLDFAELAETPSQPKNDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAADEPALSLPDDFDLSL
ADEPAEPAAPAKSEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=405962 GO602_RS16405 WP_124181122.1 3551682..3554441(-) (fimV) [Pseudomonas aeruginosa strain CMC-115]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTTCTGACTTCCGGCATGGCACACGGATTGGGGCT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAGCCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGAGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGTGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACTTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGTCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ATTCCCCGCAGGCCGCGGCAAGCGTTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCAGCGCCCCGCGAGCCCCTCAG
GCTCCGGCTCCGCTGCGTACCACCGCGCCGGCAGGCAGTGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
TGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCCGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTGCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCCGGTGC
CAGACAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCAGCCAAGGTCGACGCCACGGACAGCCTGCGCCTGG
TGTCCGGCGAGGGCAAGGCCAGCAAGGGCGCCGACAAGGGCGGAAAAGGCGATAACAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGTCTCGATAGCACTCGCCGCGAGAACGAAGAGCTGCAGAGCCGCATGCAGGATTTGCAGAGCCAGTT
GGACAAGCTACAGAAGTTGATTCAGCTGAAAGACGCTCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCGGCCCAGCCGAACGCAGTTCAGCCGGATGCGGCCCAGTCCAATGCAGCCGCGCAGGCACCGGCGCAAGCCGGGACT
CCCGCTGTGGCGGCGCCGACTCCTGCTCCGGCCGGAGAAGCCCCCGCCACTCCGGCGCAGCCCCCGGTCGCTCAGCCGCC
CGCACCGGCCGCCGAGAAGCCCCCGGCACCTGCCGTTCCGGTGCAGGCGCCAGAACAGCCGGCGCCGAGTTTCCTCGACG
AGTTGCTGGCCAACCCGCTGTGGCTGGCGGTGATCGGCGGCAGCGCACTGCTGGCATTGCTGGTGCTGTTGATGATCCTG
TCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCTGCGGATGCCGGCGAGGAACAGGAGGATGCGCT
GGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCCGCTCCGCAGGTCG
AGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCC
GAACTGTTGCAGAACGCAATCTATGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGAT
GGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAACTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCA
AGTCGCGCTACCCGGCAATGGTGGCGGTCGCCGCGGTTGCCGGCCTGGCTGGCGCCAAGCTGGCGCAGGACGAGCTGGAC
AGCTTCAGCCTCGACGACCTGTCGCTCGACGATAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGTCAGGATCTCGACGA
TGCCTTCGACCTGAGCCTGGACGACCTGGACGGCGATCTCGGCGGCGACGACGTACAGGCCGACCTCAAGTCCGACAGCG
GGGCATTGGACGATCTGACCCTGGACAGCGATCTGGACCTGGCAGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCAGAGTTGGCGGAGACTCCGAGCCAGCCCAAGAATGACGACCTGGGTGACTTCTCGCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGATGACGATTTCCTGCTTTCGCTGAACGACGAGGTGCCGGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGACGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGGCGGAGCCGGCCGCCCCGGCGAAGAGCGAGGACAGTTTCGCCGCCCAGCTGGATGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAATCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCGGCGGTTGCCT
CTGCCCTGGACGGAGACGCTGACGATGACTTCGACTTCCTCTCCGGTGCTGACGAGGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGATGAAGTACTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

96.533

100

0.97

Multiple sequence alignment