Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GO602_RS15735 Genome accession   NZ_CP046602
Coordinates   3398504..3399139 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393504..3404139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS15705 (GO602_15695) murB 3394602..3395621 (-) 1020 WP_024918020.1 UDP-N-acetylmuramate dehydrogenase -
  GO602_RS15710 (GO602_15700) - 3395618..3396082 (-) 465 WP_121127976.1 low molecular weight protein-tyrosine-phosphatase -
  GO602_RS15715 (GO602_15705) kdsB 3396082..3396846 (-) 765 WP_058139291.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GO602_RS15720 (GO602_15710) - 3396846..3397031 (-) 186 WP_003091157.1 Trm112 family protein -
  GO602_RS15725 (GO602_15715) lpxK 3397069..3398067 (-) 999 WP_058017665.1 tetraacyldisaccharide 4'-kinase -
  GO602_RS15730 (GO602_15720) - 3398067..3398507 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  GO602_RS15735 (GO602_15725) exbB 3398504..3399139 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GO602_RS15740 (GO602_15730) comA 3399212..3401437 (-) 2226 WP_124181138.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GO602_RS15745 (GO602_15735) - 3401568..3402101 (+) 534 WP_024917554.1 DUF2062 domain-containing protein -
  GO602_RS15750 (GO602_15740) - 3402207..3403451 (-) 1245 WP_058139294.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=405960 GO602_RS15735 WP_003091163.1 3398504..3399139(-) (exbB) [Pseudomonas aeruginosa strain CMC-115]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=405960 GO602_RS15735 WP_003091163.1 3398504..3399139(-) (exbB) [Pseudomonas aeruginosa strain CMC-115]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCTGCGGGCATCTCCAAGGCCTTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCGATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment