Detailed information NTG0405909

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: GO005_RS19320
• Genome accession: NZ_CP046592
• Coordinates: 3740751..3741896 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TR21
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3735751..3746896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO005_RS19300 (GO005_19290)	albF	3735767..3737047 (+)	1281	WP_032722698.1	pitrilysin family protein	-
GO005_RS19305 (GO005_19295)	albG	3737044..3737745 (+)	702	WP_015250988.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
GO005_RS19310 (GO005_19300)	ywhL	3737751..3739127 (-)	1377	WP_032722701.1	YncE family protein	-
GO005_RS19315 (GO005_19305)	ywhK	3739166..3740521 (-)	1356	WP_032722703.1	YncE family protein	-
GO005_RS21420 (GO005_19310)	-	3740518..3740748 (-)	231	WP_009968328.1	hypothetical protein	-
GO005_RS19320 (GO005_19315)	rapF	3740751..3741896 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
GO005_RS19325 (GO005_19320)	phrF	3741880..3741999 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
GO005_RS19330 (GO005_19325)	-	3742113..3742563 (+)	451	Protein_3777	YbaK/EbsC family protein	-
GO005_RS19335 (GO005_19330)	speB	3742595..3743467 (-)	873	WP_032722706.1	agmatinase	-
GO005_RS19340 (GO005_19335)	speE	3743528..3744358 (-)	831	WP_003227543.1	spermidine synthase	-
GO005_RS19345 (GO005_19340)	pbpG	3744560..3746635 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=405909 GO005_RS19320 WP_003227549.1 3740751..3741896(+) (rapF) [Bacillus subtilis strain TR21]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=405909 GO005_RS19320 WP_003227549.1 3740751..3741896(+) (rapF) [Bacillus subtilis strain TR21]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572