Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GO005_RS18270 Genome accession   NZ_CP046592
Coordinates   3539180..3539869 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain TR21     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3534180..3544869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS18235 (GO005_18230) flgN 3534361..3534843 (-) 483 WP_032722609.1 flagellar protein FlgN -
  GO005_RS18240 (GO005_18235) flgM 3534859..3535125 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  GO005_RS18245 (GO005_18240) yvyF 3535206..3535625 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GO005_RS18250 (GO005_18245) comFC 3535698..3536420 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  GO005_RS18255 (GO005_18250) comFB 3536384..3536680 (-) 297 WP_015483764.1 late competence protein ComFB -
  GO005_RS18260 (GO005_18255) comFA 3536740..3538131 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  GO005_RS18265 (GO005_18260) fakBA 3538237..3539082 (-) 846 WP_003244125.1 DegV family protein -
  GO005_RS18270 (GO005_18265) degU 3539180..3539869 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GO005_RS18275 (GO005_18270) degS 3539952..3541109 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GO005_RS18280 (GO005_18275) yvyE 3541326..3541979 (+) 654 WP_003227979.1 YigZ family protein -
  GO005_RS18285 (GO005_18280) tagV 3541979..3543154 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GO005_RS18290 (GO005_18285) tagO 3543227..3544303 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=405905 GO005_RS18270 WP_003219701.1 3539180..3539869(-) (degU) [Bacillus subtilis strain TR21]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=405905 GO005_RS18270 WP_003219701.1 3539180..3539869(-) (degU) [Bacillus subtilis strain TR21]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment