Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GO005_RS18250 Genome accession   NZ_CP046592
Coordinates   3535698..3536420 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3530698..3541420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS18215 (GO005_18210) fliW 3530838..3531269 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  GO005_RS18220 (GO005_18215) yviE 3531290..3531865 (-) 576 WP_003243053.1 DUF6470 family protein -
  GO005_RS18225 (GO005_18220) flgL 3531912..3532808 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  GO005_RS18230 (GO005_18225) flgK 3532819..3534342 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  GO005_RS18235 (GO005_18230) flgN 3534361..3534843 (-) 483 WP_032722609.1 flagellar protein FlgN -
  GO005_RS18240 (GO005_18235) flgM 3534859..3535125 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  GO005_RS18245 (GO005_18240) yvyF 3535206..3535625 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GO005_RS18250 (GO005_18245) comFC 3535698..3536420 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  GO005_RS18255 (GO005_18250) comFB 3536384..3536680 (-) 297 WP_015483764.1 late competence protein ComFB -
  GO005_RS18260 (GO005_18255) comFA 3536740..3538131 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  GO005_RS18265 (GO005_18260) fakBA 3538237..3539082 (-) 846 WP_003244125.1 DegV family protein -
  GO005_RS18270 (GO005_18265) degU 3539180..3539869 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GO005_RS18275 (GO005_18270) degS 3539952..3541109 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=405903 GO005_RS18250 WP_014481051.1 3535698..3536420(-) (comFC) [Bacillus subtilis strain TR21]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=405903 GO005_RS18250 WP_014481051.1 3535698..3536420(-) (comFC) [Bacillus subtilis strain TR21]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment