Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GO005_RS12435 Genome accession   NZ_CP046592
Coordinates   2435961..2436296 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain TR21     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430961..2441296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS12415 (GO005_12395) gcvT 2431553..2432641 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  GO005_RS12420 (GO005_12400) hepAA 2433083..2434756 (+) 1674 WP_029726726.1 SNF2-related protein -
  GO005_RS12425 (GO005_12405) yqhG 2434777..2435571 (+) 795 WP_015714249.1 YqhG family protein -
  GO005_RS12430 (GO005_12410) sinI 2435754..2435927 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GO005_RS12435 (GO005_12415) sinR 2435961..2436296 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GO005_RS12440 (GO005_12420) tasA 2436389..2437174 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GO005_RS12445 (GO005_12425) sipW 2437238..2437810 (-) 573 WP_072692741.1 signal peptidase I SipW -
  GO005_RS12450 (GO005_12430) tapA 2437794..2438555 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GO005_RS12455 (GO005_12435) yqzG 2438827..2439153 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GO005_RS12460 (GO005_12440) spoIITA 2439195..2439374 (-) 180 WP_029726723.1 YqzE family protein -
  GO005_RS12465 (GO005_12445) comGG 2439446..2439820 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GO005_RS12470 (GO005_12450) comGF 2439821..2440204 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  GO005_RS12475 (GO005_12455) comGE 2440230..2440577 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GO005_RS12480 (GO005_12460) comGD 2440561..2440992 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  GO005_RS12485 (GO005_12465) comGC 2440982..2441278 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=405877 GO005_RS12435 WP_003226345.1 2435961..2436296(+) (sinR) [Bacillus subtilis strain TR21]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=405877 GO005_RS12435 WP_003226345.1 2435961..2436296(+) (sinR) [Bacillus subtilis strain TR21]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment