Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GO005_RS05885 Genome accession   NZ_CP046592
Coordinates   1134036..1134614 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129036..1139614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS05865 (GO005_05855) hemAT 1129547..1130845 (-) 1299 WP_032721925.1 heme-based aerotactic transducer HemAT -
  GO005_RS05870 (GO005_05860) comW 1130984..1132513 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  GO005_RS05875 (GO005_05865) yhxC 1132625..1133482 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GO005_RS05880 (GO005_05870) yhzC 1133510..1133743 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GO005_RS05885 (GO005_05875) comK 1134036..1134614 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  GO005_RS05890 (GO005_05880) yhxD 1134661..1135560 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  GO005_RS05895 (GO005_05885) yhjA 1135777..1136046 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  GO005_RS05900 (GO005_05890) yhjB 1136089..1137558 (-) 1470 WP_032721274.1 sodium:solute symporter -
  GO005_RS05905 (GO005_05895) yhjC 1137555..1137755 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GO005_RS05910 (GO005_05900) - 1137963..1138325 (-) 363 WP_024571727.1 hypothetical protein -
  GO005_RS05915 (GO005_05905) yhjE 1138477..1139100 (+) 624 WP_010886465.1 VTT domain-containing protein -
  GO005_RS05920 (GO005_05910) lepB 1139102..1139608 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=405854 GO005_RS05885 WP_029317573.1 1134036..1134614(+) (comK) [Bacillus subtilis strain TR21]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=405854 GO005_RS05885 WP_029317573.1 1134036..1134614(+) (comK) [Bacillus subtilis strain TR21]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment