Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   GO005_RS02340 Genome accession   NZ_CP046592
Coordinates   426014..426412 (-) Length   132 a.a.
NCBI ID   WP_032722902.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 421014..431412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS02310 (GO005_02295) yckA 421714..422394 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  GO005_RS02315 (GO005_02300) yckB 422404..423267 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  GO005_RS02320 (GO005_02305) - 423429..423621 (+) 193 Protein_416 hypothetical protein -
  GO005_RS02325 (GO005_02310) - 423657..423977 (+) 321 Protein_417 RDD family protein -
  GO005_RS02330 (GO005_02315) yckD 424059..424391 (+) 333 WP_015252849.1 YckD family protein -
  GO005_RS02335 (GO005_02320) bglC 424544..425977 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  GO005_RS02340 (GO005_02325) nin/comJ 426014..426412 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  GO005_RS02345 (GO005_02330) nucA/comI 426439..426888 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  GO005_RS02350 (GO005_02335) tlpC 427056..428777 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  GO005_RS02355 (GO005_02340) hxlB 428888..429445 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  GO005_RS02360 (GO005_02345) hxlA 429451..430083 (-) 633 WP_032722903.1 3-hexulose-6-phosphate synthase -
  GO005_RS02365 (GO005_02350) hxlR 430316..430678 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14961.94 Da        Isoelectric Point: 5.1546

>NTDB_id=405843 GO005_RS02340 WP_032722902.1 426014..426412(-) (nin/comJ) [Bacillus subtilis strain TR21]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAANGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=405843 GO005_RS02340 WP_032722902.1 426014..426412(-) (nin/comJ) [Bacillus subtilis strain TR21]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAAACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985

Multiple sequence alignment