Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SELSP_RS04530 Genome accession   NC_015437
Coordinates   1006820..1007743 (+) Length   307 a.a.
NCBI ID   WP_006193029.1    Uniprot ID   C9LW81
Organism   Selenomonas sputigena ATCC 35185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1001820..1012743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SELSP_RS04520 (Selsp_0897) - 1002306..1003211 (+) 906 WP_013740721.1 LysR family transcriptional regulator -
  SELSP_RS04525 (Selsp_0898) smc 1003246..1006791 (+) 3546 WP_006193028.1 chromosome segregation protein SMC -
  SELSP_RS04530 (Selsp_0899) pilA 1006820..1007743 (+) 924 WP_006193029.1 signal recognition particle-docking protein FtsY Machinery gene
  SELSP_RS04535 (Selsp_0900) typA 1007867..1009684 (+) 1818 WP_006193030.1 translational GTPase TypA -
  SELSP_RS04540 (Selsp_0901) - 1009884..1010444 (+) 561 WP_013740722.1 cell division protein SepF -
  SELSP_RS04545 (Selsp_0902) pepD 1010555..1012003 (+) 1449 WP_006193033.1 beta-Ala-His dipeptidase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33172.30 Da        Isoelectric Point: 5.5334

>NTDB_id=40584 SELSP_RS04530 WP_006193029.1 1006820..1007743(+) (pilA) [Selenomonas sputigena ATCC 35185]
MGFFDRLKKGLAKTRETFTNKIEKLIIGYADIDDDLLDELEETLIMSDVGVKTTERLMADVRKGIKKKDINTPEDLKPFL
AEKISEILSTGSDETRIASAGPTVLLVIGVNGVGKTTTIGKLAAYYKEQGKSVMLAAADTFRAAAIDQLQIWGDRTGVPV
IRHEEGSDPAAVAFDAVKAARARSIDVLIIDTAGRLHTKSNLMEELKKINRVIQREIAEAPHETLLVLDATTGQNAISQA
DLFQKAAAITGIVLTKLDGTAKGGVIIGLKSELSMPVKWIGVGEGVDDLRPFIAKDFARALFGLNAE

Nucleotide


Download         Length: 924 bp        

>NTDB_id=40584 SELSP_RS04530 WP_006193029.1 1006820..1007743(+) (pilA) [Selenomonas sputigena ATCC 35185]
ATGGGATTTTTTGACCGATTGAAAAAGGGGCTTGCCAAGACCCGCGAGACCTTTACGAACAAGATTGAAAAACTCATCAT
CGGCTATGCGGATATCGATGACGATCTGCTCGATGAGTTGGAGGAAACTCTGATCATGTCCGATGTCGGCGTGAAGACGA
CGGAAAGACTCATGGCAGATGTGCGAAAGGGCATCAAGAAGAAAGACATCAATACGCCGGAAGATTTGAAGCCCTTCCTC
GCTGAGAAGATTTCCGAAATCCTCTCAACAGGTTCGGACGAAACGCGGATCGCTTCCGCAGGGCCTACGGTGCTCCTCGT
CATCGGCGTCAACGGCGTCGGCAAGACGACGACGATCGGCAAGCTCGCCGCCTACTATAAGGAGCAAGGCAAGTCCGTCA
TGCTCGCTGCCGCCGACACCTTCCGCGCTGCCGCCATCGATCAGCTGCAGATTTGGGGCGATCGCACGGGTGTTCCTGTC
ATTCGCCACGAGGAAGGCTCCGATCCTGCCGCCGTCGCCTTCGATGCGGTCAAGGCGGCGAGGGCGCGCAGCATCGACGT
CTTGATCATTGATACGGCGGGGCGTCTGCATACGAAATCGAACCTGATGGAAGAGCTGAAGAAGATCAACCGCGTGATCC
AGCGCGAGATTGCTGAGGCGCCGCATGAGACGCTGCTCGTCCTCGATGCGACGACGGGGCAGAATGCGATCAGTCAGGCA
GATCTTTTCCAAAAAGCGGCGGCAATCACGGGCATCGTTCTGACGAAGCTCGACGGAACGGCGAAGGGCGGTGTCATCAT
CGGCCTGAAATCGGAGCTTTCCATGCCGGTGAAATGGATTGGCGTCGGCGAGGGAGTCGACGATCTGCGCCCGTTCATCG
CCAAGGATTTCGCGCGCGCCCTCTTCGGGCTGAATGCGGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(19-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9LW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.175

98.697

0.485

Multiple sequence alignment