Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GOY09_RS11165 | Genome accession | NZ_CP046590 |
| Coordinates | 2152912..2153883 (+) | Length | 323 a.a. |
| NCBI ID | WP_164942281.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain LI021 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2147912..2158883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOY09_RS11125 (GOY09_11095) | - | 2147997..2148551 (+) | 555 | WP_211552950.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| GOY09_RS11130 (GOY09_11100) | - | 2148527..2149975 (+) | 1449 | WP_211552951.1 | rhomboid family protein | - |
| GOY09_RS11135 (GOY09_11105) | - | 2149980..2150171 (+) | 192 | WP_086042738.1 | YqgQ family protein | - |
| GOY09_RS11140 (GOY09_11110) | - | 2150168..2151136 (+) | 969 | WP_211552952.1 | ROK family glucokinase | - |
| GOY09_RS11145 (GOY09_11115) | - | 2151136..2151447 (+) | 312 | WP_086042736.1 | MTH1187 family thiamine-binding protein | - |
| GOY09_RS11150 (GOY09_11120) | - | 2151474..2151713 (-) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| GOY09_RS11155 (GOY09_11125) | - | 2151803..2152423 (+) | 621 | WP_211552953.1 | MBL fold metallo-hydrolase | - |
| GOY09_RS11160 (GOY09_11130) | - | 2152451..2152699 (-) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| GOY09_RS11165 (GOY09_11135) | comGA | 2152912..2153883 (+) | 972 | WP_164942281.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GOY09_RS11170 (GOY09_11140) | comGB | 2153858..2154907 (+) | 1050 | WP_211552954.1 | competence type IV pilus assembly protein ComGB | - |
| GOY09_RS11175 (GOY09_11145) | comGC | 2154922..2155254 (+) | 333 | WP_211552955.1 | competence type IV pilus major pilin ComGC | - |
| GOY09_RS11180 (GOY09_11150) | comGD | 2155247..2155672 (+) | 426 | WP_211552956.1 | competence type IV pilus minor pilin ComGD | - |
| GOY09_RS11185 (GOY09_11155) | - | 2155659..2155901 (+) | 243 | WP_158290712.1 | hypothetical protein | - |
| GOY09_RS11190 (GOY09_11160) | - | 2155846..2156298 (+) | 453 | WP_210151817.1 | competence type IV pilus minor pilin ComGF | - |
| GOY09_RS11195 (GOY09_11165) | - | 2156459..2156965 (+) | 507 | WP_211552957.1 | shikimate kinase | - |
| GOY09_RS11200 (GOY09_11170) | gcvT | 2157103..2158188 (+) | 1086 | WP_211554736.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37275.84 Da Isoelectric Point: 6.5751
>NTDB_id=405757 GOY09_RS11165 WP_164942281.1 2152912..2153883(+) (comGA) [Macrococcoides canis strain LI021]
MEQLFNEIIEEAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLVRKKDGMGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEQLFNEIIEEAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLVRKKDGMGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=405757 GOY09_RS11165 WP_164942281.1 2152912..2153883(+) (comGA) [Macrococcoides canis strain LI021]
ATGGAACAGTTATTCAATGAAATAATAGAGGAAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATGCTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGATGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAACAGTTATTCAATGAAATAATAGAGGAAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATGCTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGATGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
49.39 |
100 |
0.502 |
| comGA | Staphylococcus aureus N315 |
49.39 |
100 |
0.502 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
37.73 |
100 |
0.381 |
| pilB | Glaesserella parasuis strain SC1401 |
34.302 |
100 |
0.365 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
35.03 |
100 |
0.362 |