Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GNK04_RS21410 Genome accession   NZ_CP046564
Coordinates   4207145..4207486 (+) Length   113 a.a.
NCBI ID   WP_159786237.1    Uniprot ID   -
Organism   Bacillus sp. N1-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4202145..4212486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS21370 (GNK04_21360) - 4202426..4202896 (-) 471 WP_159786213.1 TRAP transporter small permease -
  GNK04_RS21375 (GNK04_21365) - 4202964..4203986 (-) 1023 WP_159786216.1 TRAP transporter substrate-binding protein -
  GNK04_RS21380 (GNK04_21370) - 4204309..4204947 (-) 639 WP_159786219.1 GntR family transcriptional regulator -
  GNK04_RS21385 (GNK04_21375) - 4205104..4205397 (-) 294 WP_159786222.1 hypothetical protein -
  GNK04_RS21390 (GNK04_21380) - 4205745..4205864 (+) 120 WP_159786225.1 anti-repressor SinI family protein -
  GNK04_RS21395 (GNK04_21385) sinR 4205978..4206313 (+) 336 WP_159786228.1 helix-turn-helix domain-containing protein Regulator
  GNK04_RS21400 (GNK04_21390) - 4206437..4206700 (-) 264 WP_159786231.1 hypothetical protein -
  GNK04_RS21405 (GNK04_21395) - 4206713..4206835 (-) 123 WP_159786234.1 anti-repressor SinI family protein -
  GNK04_RS21410 (GNK04_21400) sinR 4207145..4207486 (+) 342 WP_159786237.1 helix-turn-helix domain-containing protein Regulator
  GNK04_RS21415 (GNK04_21405) - 4207522..4207695 (-) 174 WP_159786240.1 hypothetical protein -
  GNK04_RS21420 (GNK04_21410) fabZ 4207927..4208349 (-) 423 WP_098445360.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GNK04_RS21425 (GNK04_21415) - 4208368..4208652 (-) 285 WP_159786243.1 DNA-directed RNA polymerase subunit beta -
  GNK04_RS21430 (GNK04_21420) - 4208689..4209690 (-) 1002 WP_098445362.1 rod shape-determining protein -
  GNK04_RS21435 (GNK04_21425) spoIIID 4209830..4210102 (-) 273 WP_048311390.1 sporulation transcriptional regulator SpoIIID -
  GNK04_RS21440 (GNK04_21430) - 4210431..4212092 (-) 1662 WP_159786246.1 sodium:solute symporter family protein -
  GNK04_RS21445 (GNK04_21435) - 4212105..4212404 (-) 300 WP_159786249.1 sodium/substrate symporter small subunit -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13178.10 Da        Isoelectric Point: 5.0517

>NTDB_id=405565 GNK04_RS21410 WP_159786237.1 4207145..4207486(+) (sinR) [Bacillus sp. N1-1]
MIGEKIKLYRNRMGLSLTELAKRAGVAKSYLSSIERNQQANPSIQFLEKIAAELKVPIEVFILEEDHEEPVLDTEWKELI
EEAMRSGITKEDFADYLEFKKWQMHHGKSEPEK

Nucleotide


Download         Length: 342 bp        

>NTDB_id=405565 GNK04_RS21410 WP_159786237.1 4207145..4207486(+) (sinR) [Bacillus sp. N1-1]
ATGATCGGTGAAAAAATTAAACTTTATCGGAATCGAATGGGATTGTCGTTGACGGAATTAGCGAAGCGAGCAGGCGTTGC
AAAGTCCTATCTAAGTTCCATCGAACGGAATCAACAAGCGAATCCCTCTATTCAATTTCTTGAAAAAATTGCAGCAGAAC
TTAAAGTACCGATTGAGGTATTCATTCTTGAAGAAGATCATGAGGAACCTGTGCTTGATACAGAATGGAAAGAATTGATC
GAAGAAGCCATGCGCTCTGGCATTACAAAAGAAGATTTTGCAGATTATTTAGAGTTTAAAAAGTGGCAAATGCATCATGG
AAAAAGCGAGCCGGAAAAATAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

54.717

93.805

0.513

Multiple sequence alignment