Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GNK04_RS21395 | Genome accession | NZ_CP046564 |
| Coordinates | 4205978..4206313 (+) | Length | 111 a.a. |
| NCBI ID | WP_159786228.1 | Uniprot ID | - |
| Organism | Bacillus sp. N1-1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4200978..4211313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNK04_RS21365 (GNK04_21355) | - | 4201149..4202429 (-) | 1281 | WP_159786210.1 | TRAP transporter large permease | - |
| GNK04_RS21370 (GNK04_21360) | - | 4202426..4202896 (-) | 471 | WP_159786213.1 | TRAP transporter small permease | - |
| GNK04_RS21375 (GNK04_21365) | - | 4202964..4203986 (-) | 1023 | WP_159786216.1 | TRAP transporter substrate-binding protein | - |
| GNK04_RS21380 (GNK04_21370) | - | 4204309..4204947 (-) | 639 | WP_159786219.1 | GntR family transcriptional regulator | - |
| GNK04_RS21385 (GNK04_21375) | - | 4205104..4205397 (-) | 294 | WP_159786222.1 | hypothetical protein | - |
| GNK04_RS21390 (GNK04_21380) | - | 4205745..4205864 (+) | 120 | WP_159786225.1 | anti-repressor SinI family protein | - |
| GNK04_RS21395 (GNK04_21385) | sinR | 4205978..4206313 (+) | 336 | WP_159786228.1 | helix-turn-helix domain-containing protein | Regulator |
| GNK04_RS21400 (GNK04_21390) | - | 4206437..4206700 (-) | 264 | WP_159786231.1 | hypothetical protein | - |
| GNK04_RS21405 (GNK04_21395) | - | 4206713..4206835 (-) | 123 | WP_159786234.1 | anti-repressor SinI family protein | - |
| GNK04_RS21410 (GNK04_21400) | sinR | 4207145..4207486 (+) | 342 | WP_159786237.1 | helix-turn-helix domain-containing protein | Regulator |
| GNK04_RS21415 (GNK04_21405) | - | 4207522..4207695 (-) | 174 | WP_159786240.1 | hypothetical protein | - |
| GNK04_RS21420 (GNK04_21410) | fabZ | 4207927..4208349 (-) | 423 | WP_098445360.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| GNK04_RS21425 (GNK04_21415) | - | 4208368..4208652 (-) | 285 | WP_159786243.1 | DNA-directed RNA polymerase subunit beta | - |
| GNK04_RS21430 (GNK04_21420) | - | 4208689..4209690 (-) | 1002 | WP_098445362.1 | rod shape-determining protein | - |
| GNK04_RS21435 (GNK04_21425) | spoIIID | 4209830..4210102 (-) | 273 | WP_048311390.1 | sporulation transcriptional regulator SpoIIID | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12746.50 Da Isoelectric Point: 6.4811
>NTDB_id=405564 GNK04_RS21395 WP_159786228.1 4205978..4206313(+) (sinR) [Bacillus sp. N1-1]
MIGEEVKKYRLRKGLSLSELAERANVAKSYLSSIERNIQSNPSIQFLDKISNVLDVSVEVLLQGDDPIHQSELDAEWKKL
VKEAMESGVSKDQFKEFLEFNKWRAKQGPHQ
MIGEEVKKYRLRKGLSLSELAERANVAKSYLSSIERNIQSNPSIQFLDKISNVLDVSVEVLLQGDDPIHQSELDAEWKKL
VKEAMESGVSKDQFKEFLEFNKWRAKQGPHQ
Nucleotide
Download Length: 336 bp
>NTDB_id=405564 GNK04_RS21395 WP_159786228.1 4205978..4206313(+) (sinR) [Bacillus sp. N1-1]
GTGATCGGAGAAGAAGTTAAAAAGTATCGTTTACGCAAAGGGTTATCACTTTCAGAGCTAGCAGAGCGCGCCAACGTTGC
TAAATCGTATTTAAGTTCCATTGAACGAAATATACAATCAAATCCCTCTATTCAATTTTTAGATAAAATATCGAATGTTT
TGGACGTGTCAGTTGAAGTACTTCTTCAAGGGGATGATCCCATTCATCAAAGTGAATTAGATGCAGAATGGAAGAAGTTA
GTGAAGGAAGCTATGGAGTCCGGTGTTAGTAAAGATCAATTCAAGGAATTTCTTGAATTTAATAAATGGCGCGCAAAGCA
GGGGCCTCATCAATAA
GTGATCGGAGAAGAAGTTAAAAAGTATCGTTTACGCAAAGGGTTATCACTTTCAGAGCTAGCAGAGCGCGCCAACGTTGC
TAAATCGTATTTAAGTTCCATTGAACGAAATATACAATCAAATCCCTCTATTCAATTTTTAGATAAAATATCGAATGTTT
TGGACGTGTCAGTTGAAGTACTTCTTCAAGGGGATGATCCCATTCATCAAAGTGAATTAGATGCAGAATGGAAGAAGTTA
GTGAAGGAAGCTATGGAGTCCGGTGTTAGTAAAGATCAATTCAAGGAATTTCTTGAATTTAATAAATGGCGCGCAAAGCA
GGGGCCTCATCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
64.865 |
100 |
0.649 |