Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GNK04_RS19245 Genome accession   NZ_CP046564
Coordinates   3720734..3721438 (-) Length   234 a.a.
NCBI ID   WP_159785070.1    Uniprot ID   -
Organism   Bacillus sp. N1-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3715734..3726438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS19220 (GNK04_19215) cspD 3716002..3716202 (-) 201 WP_098445063.1 cold-shock protein CspD -
  GNK04_RS19225 (GNK04_19220) - 3716343..3716780 (-) 438 WP_159785061.1 phosphoribosyltransferase family protein -
  GNK04_RS19230 (GNK04_19225) - 3717053..3718594 (-) 1542 WP_240903978.1 DEAD/DEAH box helicase -
  GNK04_RS19235 (GNK04_19230) - 3718569..3719417 (-) 849 WP_159785064.1 DegV family protein -
  GNK04_RS19240 (GNK04_19235) - 3719727..3720653 (+) 927 WP_159785067.1 peptidoglycan-binding protein -
  GNK04_RS19245 (GNK04_19240) degU 3720734..3721438 (-) 705 WP_159785070.1 response regulator transcription factor Regulator
  GNK04_RS19250 (GNK04_19245) - 3721442..3722593 (-) 1152 WP_159785073.1 sensor histidine kinase -
  GNK04_RS19255 (GNK04_19250) - 3722866..3723498 (+) 633 WP_159785076.1 YigZ family protein -
  GNK04_RS19260 (GNK04_19255) - 3723722..3724780 (+) 1059 WP_159787740.1 MraY family glycosyltransferase -
  GNK04_RS19265 (GNK04_19260) - 3724875..3725843 (-) 969 WP_159785079.1 LCP family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26514.40 Da        Isoelectric Point: 6.5048

>NTDB_id=405563 GNK04_RS19245 WP_159785070.1 3720734..3721438(-) (degU) [Bacillus sp. N1-1]
MYAAKTKTKIIIIDDHRLFREGVKRILDMEDDFEVIAEGDDGDEALRLVEENKPDVVLMDINMPHVNGVEATRQLIEQVP
ETKVIILSIHDDETYVTHAVKTGAAGYLLKEMDANSLVEAVKVVASGGAYIHPKVTHNLVNEYRRLATEGKRPSTQIGYK
EVEYRKPLHILTRRECEVLQLLTDGKSNRSIGEDLYISEKTVKNHVSNILQKMNVNDRTQAVVEAIKKGWVKVR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=405563 GNK04_RS19245 WP_159785070.1 3720734..3721438(-) (degU) [Bacillus sp. N1-1]
ATGTATGCAGCAAAGACCAAAACTAAAATTATTATTATAGATGACCATCGCTTGTTCCGCGAAGGTGTTAAGCGTATTTT
GGATATGGAAGATGATTTCGAAGTGATTGCTGAAGGTGATGATGGAGACGAAGCGCTTCGTCTTGTTGAAGAAAATAAGC
CTGATGTTGTTTTAATGGATATTAATATGCCACATGTAAACGGCGTTGAAGCTACGAGACAGCTGATCGAACAAGTGCCT
GAGACTAAGGTGATTATTTTATCGATCCATGATGACGAAACGTACGTAACCCACGCGGTAAAGACCGGTGCTGCGGGCTA
TTTATTAAAAGAGATGGATGCAAATTCGCTAGTTGAAGCCGTTAAAGTTGTCGCTTCTGGAGGAGCTTACATTCACCCAA
AAGTGACGCATAATCTTGTGAATGAGTACCGTCGTCTCGCTACGGAAGGAAAAAGACCATCTACCCAAATTGGTTATAAG
GAAGTGGAGTACCGCAAACCACTTCACATTTTGACACGACGAGAATGTGAAGTGCTCCAGTTACTTACAGATGGAAAAAG
CAATCGCTCGATCGGTGAAGATCTTTACATTAGTGAGAAAACAGTAAAAAACCACGTATCGAATATTTTGCAGAAGATGA
ATGTAAATGACCGAACGCAAGCTGTCGTAGAGGCAATCAAAAAAGGTTGGGTAAAGGTGCGCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(170-225)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

76.623

98.718

0.756

Multiple sequence alignment