Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GNK04_RS15005 Genome accession   NZ_CP046564
Coordinates   2872833..2873582 (-) Length   249 a.a.
NCBI ID   WP_159783263.1    Uniprot ID   -
Organism   Bacillus sp. N1-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2867833..2878582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS14985 (GNK04_14985) dnaG 2868617..2870437 (-) 1821 WP_159783257.1 DNA primase -
  GNK04_RS14990 (GNK04_14990) - 2870457..2870948 (-) 492 WP_159783259.1 DUF188 domain-containing protein -
  GNK04_RS14995 (GNK04_14995) - 2871204..2872028 (-) 825 WP_159783261.1 pyruvate, water dikinase regulatory protein -
  GNK04_RS15000 (GNK04_15000) - 2872043..2872684 (-) 642 WP_098444283.1 helix-turn-helix transcriptional regulator -
  GNK04_RS15005 (GNK04_15005) recO 2872833..2873582 (-) 750 WP_159783263.1 DNA repair protein RecO Machinery gene
  GNK04_RS15010 (GNK04_15010) - 2873622..2873759 (-) 138 WP_159783265.1 YqzL family protein -
  GNK04_RS15015 (GNK04_15015) era 2873860..2874768 (-) 909 WP_098444286.1 GTPase Era -
  GNK04_RS15020 (GNK04_15020) - 2874761..2875159 (-) 399 WP_159783267.1 cytidine deaminase -
  GNK04_RS15025 (GNK04_15025) - 2875172..2875561 (-) 390 WP_240903941.1 diacylglycerol kinase family protein -
  GNK04_RS15030 (GNK04_15030) ybeY 2875545..2876018 (-) 474 WP_159783271.1 rRNA maturation RNase YbeY -
  GNK04_RS15035 (GNK04_15035) - 2876015..2878141 (-) 2127 WP_159783273.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28523.18 Da        Isoelectric Point: 9.1521

>NTDB_id=405552 GNK04_RS15005 WP_159783263.1 2872833..2873582(-) (recO) [Bacillus sp. N1-1]
MLKKVEGIVIRTVDYGETNKILTIYSRETGKVGVMARGAKKPKSRLSAVSQLFVYGQYLYQHTSGLGGLNQGEIIDSFRS
IRNDLFLTSYAAYAAELVDKLTEERKPNPYLFEMLYQVLHSLNEEKDPEVILFIFELKMLRVAGITPQLDRCANCGLSEG
KFHFSINEGGLLCHRCLSVDPYNIPIMKRTAELLHLFAHIDLGRLGNISLKKETKKEIRQILNLYFDAYSGLYLKSKRFL
DQLDRFKLE

Nucleotide


Download         Length: 750 bp        

>NTDB_id=405552 GNK04_RS15005 WP_159783263.1 2872833..2873582(-) (recO) [Bacillus sp. N1-1]
TTGTTAAAAAAGGTTGAAGGAATTGTGATTCGAACCGTGGACTATGGTGAAACAAATAAAATACTGACGATTTATTCGAG
AGAGACGGGTAAGGTTGGCGTCATGGCAAGAGGCGCAAAAAAACCTAAAAGCCGTCTTTCTGCTGTTTCACAACTTTTTG
TCTATGGACAGTACCTTTATCAGCATACATCGGGCCTTGGGGGATTGAATCAGGGAGAAATAATTGATTCGTTTCGCTCC
ATAAGAAATGATTTGTTTCTCACTTCCTATGCGGCATATGCGGCAGAGTTAGTTGATAAATTAACAGAAGAGAGAAAACC
CAACCCTTATTTATTTGAAATGCTTTATCAGGTCCTTCATTCGTTGAATGAAGAAAAAGACCCTGAAGTCATTTTATTTA
TTTTTGAGCTTAAAATGCTTCGCGTTGCAGGAATTACACCACAACTAGATCGTTGTGCAAACTGTGGTCTTTCTGAAGGG
AAGTTTCATTTCTCTATTAATGAAGGTGGATTACTATGTCATCGGTGTCTTTCAGTGGATCCTTATAACATTCCGATCAT
GAAACGGACAGCAGAACTTCTTCATTTATTTGCACATATTGATTTGGGAAGATTGGGAAATATTTCACTAAAAAAAGAAA
CAAAAAAAGAGATTAGACAAATTCTTAACCTTTATTTTGACGCTTATTCCGGTCTTTATTTAAAATCAAAACGTTTTTTG
GATCAGTTGGACCGGTTTAAACTTGAGTAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

63.158

99.197

0.627

Multiple sequence alignment