Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GNK04_RS00020 Genome accession   NZ_CP046564
Coordinates   3105..4223 (+) Length   372 a.a.
NCBI ID   WP_098445630.1    Uniprot ID   -
Organism   Bacillus sp. N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS00005 (GNK04_00005) dnaA 1..1353 (+) 1353 WP_098445627.1 chromosomal replication initiator protein DnaA -
  GNK04_RS00010 (GNK04_00010) dnaN 1549..2691 (+) 1143 WP_159780740.1 DNA polymerase III subunit beta -
  GNK04_RS00015 (GNK04_00015) yaaA 2878..3090 (+) 213 WP_159780741.1 S4 domain-containing protein YaaA -
  GNK04_RS00020 (GNK04_00020) recF 3105..4223 (+) 1119 WP_098445630.1 DNA replication/repair protein RecF Machinery gene
  GNK04_RS00025 (GNK04_00025) - 4233..4511 (+) 279 WP_098445631.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  GNK04_RS00030 (GNK04_00030) gyrB 4581..6509 (+) 1929 WP_159780742.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GNK04_RS00035 (GNK04_00035) gyrA 6641..9199 (+) 2559 WP_159780743.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43004.29 Da        Isoelectric Point: 7.6839

>NTDB_id=405525 GNK04_RS00020 WP_098445630.1 3105..4223(+) (recF) [Bacillus sp. N1-1]
MHLNTLKVTNYRNYHKQELQFENNVNVFLGENAQGKTNIMEAIYVLAMARSHRTPRDKELINWDEEYAKIEGRIEKRNGP
LSLQLVISQKGKKAKLNQLEQQKLSNYIGAMNVVMFAPEDLNLVKGNPGVRRRFIDIEIGQVQPVYLYHLGRYLKLLQQR
NSLLKTMRYQKKPDYVMLDILTEQLIEAAANIYLRRVRFVQLLQQWAEPIHYGISRGLEKLEIHYNPTVEVSEPTDLSKI
VDGYKEKFDKIKEREVERGVTLAGPHRDDLSFFVNGKDVQTYGSQGQQRTTALSLKLAEIELIHSEVGEYPLLLLDDVLS
ELDDFRQSHLLNTIQGKVQTFVTTTSVEGIHHETLEKATTFQVQEGLIEKVK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=405525 GNK04_RS00020 WP_098445630.1 3105..4223(+) (recF) [Bacillus sp. N1-1]
TTGCATCTAAACACATTAAAAGTAACGAATTATCGTAATTATCATAAGCAAGAACTTCAGTTTGAAAATAACGTAAATGT
TTTTCTTGGCGAGAATGCGCAAGGAAAAACAAATATCATGGAAGCCATCTATGTCCTTGCTATGGCGAGGTCTCATCGTA
CACCAAGAGATAAAGAATTAATCAATTGGGACGAGGAATATGCTAAAATAGAAGGTAGAATTGAAAAACGAAATGGTCCC
CTCTCCCTCCAACTGGTTATTTCCCAAAAAGGTAAGAAAGCCAAGCTAAATCAATTGGAACAGCAGAAGCTTAGCAACTA
TATTGGTGCCATGAATGTTGTCATGTTTGCACCAGAGGATCTCAATCTGGTTAAAGGTAATCCTGGCGTTCGCAGAAGGT
TTATTGATATTGAGATTGGCCAGGTTCAACCCGTTTACCTTTATCATCTGGGACGATACCTTAAACTTCTTCAGCAGCGA
AACAGCTTATTGAAGACGATGCGATATCAAAAGAAACCTGATTATGTCATGCTTGATATTTTGACCGAACAATTAATAGA
AGCAGCTGCGAATATCTATTTACGACGAGTACGATTCGTTCAACTCTTGCAACAATGGGCTGAACCAATTCATTATGGGA
TTAGTAGAGGACTGGAAAAACTCGAAATCCATTATAATCCGACCGTTGAGGTATCAGAACCAACGGATTTGTCGAAAATA
GTAGATGGATATAAGGAAAAGTTTGATAAAATTAAAGAGAGAGAAGTTGAGCGTGGCGTCACGCTCGCGGGACCGCACCG
AGATGATTTGTCGTTTTTTGTAAATGGAAAGGACGTTCAAACGTATGGATCCCAGGGACAACAGCGAACAACTGCTTTAT
CCCTGAAACTCGCTGAAATTGAATTAATTCATAGTGAAGTAGGCGAATATCCTTTACTTCTACTCGATGACGTTCTGTCA
GAGTTAGATGACTTTAGACAGTCTCATCTTTTAAATACAATTCAAGGAAAAGTTCAAACGTTTGTGACCACAACGAGCGT
TGAAGGCATCCATCATGAAACGCTTGAAAAAGCGACGACTTTTCAAGTCCAAGAAGGACTAATCGAAAAGGTGAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.027

99.462

0.667

Multiple sequence alignment