Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXS80_RS15490 Genome accession   NZ_CP058556
Coordinates   3618973..3619572 (-) Length   199 a.a.
NCBI ID   WP_030113396.1    Uniprot ID   A0A1V0UBN6
Organism   Streptomyces sp. CB04723     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3613973..3624572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS15460 (HXS80_15460) - 3614309..3614845 (+) 537 WP_256986213.1 ATP-binding protein -
  HXS80_RS15465 (HXS80_15465) - 3614741..3615445 (-) 705 WP_179182043.1 2'-5' RNA ligase family protein -
  HXS80_RS15470 (HXS80_15470) - 3615501..3616841 (-) 1341 WP_179182044.1 M48 family metallopeptidase -
  HXS80_RS15475 (HXS80_15475) - 3616958..3617839 (+) 882 WP_179182045.1 helix-turn-helix transcriptional regulator -
  HXS80_RS15480 (HXS80_15480) - 3617836..3618093 (+) 258 WP_306438655.1 DUF397 domain-containing protein -
  HXS80_RS15485 (HXS80_15485) - 3618164..3618823 (-) 660 WP_030113395.1 DUF5063 domain-containing protein -
  HXS80_RS15490 (HXS80_15490) recR 3618973..3619572 (-) 600 WP_030113396.1 recombination mediator RecR Machinery gene
  HXS80_RS15495 (HXS80_15495) - 3619664..3620008 (-) 345 WP_179184381.1 YbaB/EbfC family nucleoid-associated protein -
  HXS80_RS15500 (HXS80_15500) - 3620413..3621258 (+) 846 WP_179182046.1 SLATT domain-containing protein -
  HXS80_RS15505 (HXS80_15505) - 3621556..3622206 (-) 651 WP_030113400.1 hypothetical protein -
  HXS80_RS15510 (HXS80_15510) - 3622295..3623014 (-) 720 WP_179182047.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21799.13 Da        Isoelectric Point: 5.1558

>NTDB_id=405513 HXS80_RS15490 WP_030113396.1 3618973..3619572(-) (recR) [Streptomyces sp. CB04723]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCVVCGNVAQQEQCGICRDARRDQAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=405513 HXS80_RS15490 WP_030113396.1 3618973..3619572(-) (recR) [Streptomyces sp. CB04723]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACGGACGTACGCCGGCTCGCGCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGTCGTGTGCGGCAACGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGGGACGCACGCCGCGACCAGGCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGGGAGTTCCGGGGCCGCTACCACGTTCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTGGCGCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTCAAGGTGACCCGGCTGGCCAGTGGCCTGCCGGTCGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGGGCGTTCGAGGGAAGGCGGCTGCTGGATGTCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0UBN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457