Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EML4_RS12960 Genome accession   NZ_CP058525
Coordinates   2642441..2643046 (-) Length   201 a.a.
NCBI ID   WP_003507177.1    Uniprot ID   A0A822V2D3
Organism   Agrobacterium tumefaciens strain EML4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2637441..2648046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EML4_RS12945 (EML4_12945) rimP 2638465..2639061 (-) 597 WP_121592390.1 ribosome maturation factor RimP -
  EML4_RS12950 (EML4_12950) - 2639349..2640977 (+) 1629 WP_060722713.1 MFS transporter -
  EML4_RS12955 (EML4_12955) - 2641137..2642402 (-) 1266 WP_060722714.1 lytic murein transglycosylase -
  EML4_RS12960 (EML4_12960) recR 2642441..2643046 (-) 606 WP_003507177.1 recombination mediator RecR Machinery gene
  EML4_RS12965 (EML4_12965) - 2643084..2643719 (+) 636 WP_162691552.1 MOSC domain-containing protein -
  EML4_RS12970 (EML4_12970) - 2643786..2644109 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  EML4_RS12975 (EML4_12975) - 2644134..2646011 (-) 1878 WP_065694862.1 DNA polymerase III subunit gamma/tau -
  EML4_RS12985 (EML4_12985) - 2646253..2646681 (+) 429 WP_035213077.1 HIT family protein -
  EML4_RS12990 (EML4_12990) nudC 2646681..2647643 (+) 963 WP_003507186.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21413.74 Da        Isoelectric Point: 6.3321

>NTDB_id=405484 EML4_RS12960 WP_003507177.1 2642441..2643046(-) (recR) [Agrobacterium tumefaciens strain EML4]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=405484 EML4_RS12960 WP_003507177.1 2642441..2643046(-) (recR) [Agrobacterium tumefaciens strain EML4]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTCATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCAGCGTTGCATCTCATTAAGAAGAAGGAGCAACTTCTCGGACCGCTAGGCCATGCCATGGGCGAGGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACCATCGATCCCTGCACCGTCTGCGCTGACGACCGGCGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTCTGGGCGCTGGAGCGGACGGGCGCGATGAACACCGCCTA
CCACGTTCTCGGCGGCACGCTTTCGCCACTCGATGGCGTCGGGCCGGAGGACCTGAATATCAAGGGCCTGATCGACCGTG
TCAGCGCGGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACCGCCCATTACATCACC
GACCGCCTCTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
CGAGGGCACATTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822V2D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368